Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M01
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5824| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.0  
SB_40489| Best HMM Match : PA14 (HMM E-Value=0.24)                     27   5.2  
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)                   26   9.2  

>SB_5824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 257 TYLAFTSAFHCFPIVLFLWVIDILIGYNSVPVSLHLQ 367
           +Y++FT+ F+C  + L + +  I   Y++V V +H +
Sbjct: 149 SYISFTAFFYCMVVSLTVCLCIICSSYSAVWVRVHFK 185


>SB_40489| Best HMM Match : PA14 (HMM E-Value=0.24)
          Length = 496

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 257 TYLAFTSAFHCFPIVLFLWVIDILIGYNSVPVS 355
           T+L++T+   C  +VL+   ++  IG +S+P S
Sbjct: 12  TFLSYTTLVLCILVVLWQLNVNFFIGKHSLPAS 44


>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
          Length = 671

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 272 TSAFHCFPIVLFLWVIDILIG 334
           +S F C+P+VL + V+ IL G
Sbjct: 645 SSVFQCWPLVLLIIVLSILSG 665


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,607,702
Number of Sequences: 59808
Number of extensions: 176329
Number of successful extensions: 263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)