Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M01
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    29   0.85 
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra...    28   2.0  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    27   4.5  

>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 132 FIFINFSAPLLLVPMFK*YIYRGPKKN*PKIILTDCFLTP 251
           F+ +      L++P F  ++Y G  +N   ++LTD F TP
Sbjct: 159 FVILTIFFHALIIPTFFTFLYFGMYRNMLLMVLTDIFCTP 198


>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 12
           protein.
          Length = 1022

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 239 FFNPLSTYLAFTSAFHCFPIVLFLWVIDILIGYNSV 346
           FF P   Y+ F+  F C P++L + ++  ++GY  +
Sbjct: 632 FFGPGGIYIKFSLCFIC-PVILTVLLVASVLGYQRI 666


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 239 FFNPLSTYLAFTSAFHCFPIVLFLWVIDILIGYNS-VPVSLH 361
           FF PL+        FH  P+VL   ++   I +N+ +P+ +H
Sbjct: 636 FFLPLANLSFSAYLFHMIPVVLTYMLVPFPIYFNTQIPLFIH 677


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,219,365
Number of Sequences: 27780
Number of extensions: 147390
Number of successful extensions: 286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)