Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M01
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.53 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   2.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   2.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   4.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 192 YRGPKKN*PKII 227
           YRGPK+N PK++
Sbjct: 430 YRGPKQNKPKVL 441


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 301 LIFMGNRHINRL*LCTGQFTFTSDI*LH 384
           ++F+ +  +N L   TG+  F SDI LH
Sbjct: 389 ILFVSSPFLNGLEGLTGRGLFISDIPLH 416


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +2

Query: 302 LFLWVIDILIGYNSVPVSLHLQVIYD 379
           LFLW+  + +   +  + L    +YD
Sbjct: 516 LFLWIFTLAVVVGTAGIILQAPTLYD 541


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 302 LFLWVIDILIGYNSVPVSLHLQVIYDCT 385
           +FLW+  +     +V + L    +YD T
Sbjct: 549 IFLWIFTVACVLGTVLIILQAPSLYDTT 576


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +2

Query: 302 LFLWVIDILIGYNSVPVSLHLQVIYD 379
           LFLW+  + +   +  + L    +YD
Sbjct: 521 LFLWIFTLAVLVGTAGIILQAPTLYD 546


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +2

Query: 302 LFLWVIDILIGYNSVPVSLHLQVIYD 379
           LFLW+  + +   +  + L    +YD
Sbjct: 521 LFLWIFTLAVLVGTAGIILQAPTLYD 546


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 326 LIGYNSVPVSLHLQVIY 376
           L  YN VP+++   V+Y
Sbjct: 691 LSSYNCVPINVQFSVLY 707


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 297 IGKQWKADVNAR 262
           +GK+WK ++N R
Sbjct: 90  LGKEWKKNLNLR 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,308
Number of Sequences: 438
Number of extensions: 1941
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)