Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M01
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ...    26   7.5  
At4g27100.1 68417.m03895 RabGAP/TBC domain-containing protein si...    26   9.9  
At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma m...    26   9.9  
At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma m...    26   9.9  

>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
           photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
           (Nucleic Acids Res. 26 (2), 638-644 (1998))
          Length = 556

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 163 YLYQCLSNTYTEAQKKT 213
           Y YQCL N Y + +K T
Sbjct: 292 YFYQCLQNIYKDVKKHT 308


>At4g27100.1 68417.m03895 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 487

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 217 GQFFFGPLYMYYLNIGTSSNGA 152
           GQ  + PL +  +N+GT+SNG+
Sbjct: 129 GQPNYDPLVLQEINLGTNSNGS 150


>At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma
           membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
           envelope ATPase 1 (PEA1) identical to SP|Q37145
           Calcium-transporting ATPase 1, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
           ATPase 1) {Arabidopsis thaliana}; identical to cDNA
           envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
           chloroplast protein GI:509809
          Length = 946

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 293 PIVLFLWVIDILIGYNSVPVSLHLQVI 373
           P+ L  W++ I++G+  +PV+  L++I
Sbjct: 915 PLNLGQWLVSIILGFLGMPVAAALKMI 941


>At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma
            membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
            envelope ATPase 1 (PEA1) identical to SP|Q37145
            Calcium-transporting ATPase 1, plasma membrane-type (EC
            3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
            ATPase 1) {Arabidopsis thaliana}; identical to cDNA
            envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
            chloroplast protein GI:509809
          Length = 1020

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 293  PIVLFLWVIDILIGYNSVPVSLHLQVI 373
            P+ L  W++ I++G+  +PV+  L++I
Sbjct: 989  PLNLGQWLVSIILGFLGMPVAAALKMI 1015


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,492,858
Number of Sequences: 28952
Number of extensions: 127342
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)