Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L24
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 236 1e-63
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 236 1e-63
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 49 5e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.24
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.7
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 26 3.8
SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit L4|S... 25 6.7
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 8.9
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 236 bits (578), Expect = 1e-63
Identities = 108/143 (75%), Positives = 125/143 (87%)
Frame = +1
Query: 34 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 213
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 393
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 394 KVVKVANVSLLALYKEKKERPRS 462
KVVKVA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 236 bits (578), Expect = 1e-63
Identities = 108/143 (75%), Positives = 125/143 (87%)
Frame = +1
Query: 34 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 213
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 393
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 394 KVVKVANVSLLALYKEKKERPRS 462
KVVKVA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 48.8 bits (111), Expect = 5e-07
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +1
Query: 160 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 339
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 340 AGFGRKGHAVGDIPGVRFKVVK 405
G GR D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 440 SLYRARSDTFATLTTLNLTPGMSPTAWP 357
S Y+ + DT+AT TLN PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -1
Query: 440 SLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSM 312
++Y + + +F T ++++ G S L P PA++TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -3
Query: 210 GFNANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 31
GF +++ + R E +RLP G + +V L T + L++ P + H
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409
Query: 30 D 28
D
Sbjct: 410 D 410
>SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit
L4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 144
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 62 AVRIPRGLPITIARTRSAPR 3
AVRIP+G + + +SAP+
Sbjct: 12 AVRIPKGFVFPVPKVKSAPK 31
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 289 PRDGCLNHIEENDEVLVAGFGRKGHAVG 372
PR+ +++ + ND + + G+G +GH G
Sbjct: 74 PREKLVDYFK-NDTLAIIGYGSQGHGQG 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,702
Number of Sequences: 5004
Number of extensions: 46721
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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