Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L24
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 245 1e-65
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 244 3e-65
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 151 2e-37
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 5e-07
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 31 0.73
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.73
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.3
11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584 29 2.2
04_03_0232 - 13049649-13052807 29 2.9
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 29 2.9
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 8.9
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 245 bits (600), Expect = 1e-65
Identities = 112/149 (75%), Positives = 127/149 (85%)
Frame = +1
Query: 16 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 195
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 196 VGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGD 375
+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGD
Sbjct: 224 IGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGD 283
Query: 376 IPGVRFKVVKVANVSLLALYKEKKERPRS 462
IPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 284 IPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 240 bits (588), Expect = 4e-64
Identities = 109/141 (77%), Positives = 122/141 (86%)
Frame = +1
Query: 34 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 213
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 393
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 394 KVVKVANVSLLALYKEKKERP 456
KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 244 bits (597), Expect = 3e-65
Identities = 111/143 (77%), Positives = 124/143 (86%)
Frame = +1
Query: 34 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 213
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 393
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 394 KVVKVANVSLLALYKEKKERPRS 462
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 151 bits (367), Expect = 2e-37
Identities = 72/112 (64%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Frame = +1
Query: 13 DRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVL 189
+RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVL
Sbjct: 64 ERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVL 122
Query: 190 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 345
EK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 325 DEVLVAGFGRKGHAVGDIPGVRFKVVK 405
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 12 RSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 125
R+C R +G +GY HG + + SSR + R G+ +P
Sbjct: 184 RACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.73
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 407 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 276
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 250 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 152
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584
Length = 144
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +1
Query: 1 ARGADRVRAIVMGKPRGIRTARKHVNHRR 87
A GADR R +V G PR R AR+H RR
Sbjct: 45 AAGADRRRPVV-GDPRRRRAARQHGEDRR 72
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -2
Query: 511 ASRRRQRVTHLSQCKPMTWASPSFL-CTEL 425
++R R RV HLSQC +++SP FL C+ L
Sbjct: 346 SNRSRLRVLHLSQC-TFSFSSPPFLGCSNL 374
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 3 TRSRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQG 110
++ R+ S+Y+ G +S Y GA ++ ++ +QG
Sbjct: 280 SKQRTSSKYKQGASSKYKQGASSKSKQGTSSKSKQG 315
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 401 TTLNLTPGMSPTAWPLRPNPATNTSS 324
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,576,269
Number of Sequences: 37544
Number of extensions: 368416
Number of successful extensions: 1031
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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