Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L24
(515 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 218 3e-57
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 176 1e-44
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) 36 0.026
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 30 0.98
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8) 28 5.3
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_2709| Best HMM Match : SBP (HMM E-Value=0.83) 27 6.9
SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_41748| Best HMM Match : Transposase_14 (HMM E-Value=0.79) 27 6.9
SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37) 27 9.2
SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5) 27 9.2
SB_26951| Best HMM Match : CUB (HMM E-Value=0) 27 9.2
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 218 bits (532), Expect = 3e-57
Identities = 97/116 (83%), Positives = 109/116 (93%)
Frame = +1
Query: 40 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQP 219
KPRG+RTARK +HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2 KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61
Query: 220 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 387
NSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 62 NSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 176 bits (428), Expect = 1e-44
Identities = 81/91 (89%), Positives = 89/91 (97%)
Frame = +1
Query: 190 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 369
++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAV
Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAV 112
Query: 370 GDIPGVRFKVVKVANVSLLALYKEKKERPRS 462
GDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 113 GDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
Length = 302
Score = 35.5 bits (78), Expect = 0.026
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +1
Query: 175 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 291
KG+ ++ + K+PNSA RKC ++L NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = -1
Query: 164 APPKGFAFHLVPMW-AFLN-SLSAHR 93
APPKG+ F +VP+W +F N S+ HR
Sbjct: 911 APPKGYRFLIVPLWRSFSNRSVFGHR 936
>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -1
Query: 392 NLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLRMAEFGC 213
N TP + P T+TSS + P++GT + P + T T L + C
Sbjct: 476 NPTPSVESDDMDYIPTKDTSTSSTGNQCSSVPTKGTKPMRPPPGFHALTTTQLTKTDDAC 535
Query: 212 LASTPT 195
++P+
Sbjct: 536 EPNSPS 541
>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
Length = 293
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 371 PTAWPLRPNPATNTSSFSSMWLRQPSRGTNA-VTFL 267
P W PN T S WL QP++GT+A VT+L
Sbjct: 138 PCTWLAPPNKGT---SAPVTWLAQPNKGTSAPVTWL 170
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 374 SPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 276
+P W +PN T S WL P++GT+A+
Sbjct: 151 APVTWLAQPNKGT---SAPVTWLAPPNKGTSAI 180
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 117 KSPHGYEMEGEPLRWCISC*GHRPRKS 197
+S HG MEG P+ W +S G P+ S
Sbjct: 84 RSQHGTRMEGVPVCWYVSVWGLSPQVS 110
>SB_2709| Best HMM Match : SBP (HMM E-Value=0.83)
Length = 154
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 158 PKGFAFHLVPMWAFLNSLS 102
PKG+ F +VP+W+ L + S
Sbjct: 10 PKGYRFQIVPLWSSLTNRS 28
>SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 60 GAQARESSSRAAMGRQGIQKS 122
G QARE++ R AM RQG++ +
Sbjct: 2 GRQARENTFRRAMSRQGLENT 22
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 60 GAQARESSSRAAMGRQGIQKS 122
G QARE++ R AM RQG++ +
Sbjct: 281 GRQARENTFRRAMSRQGLENT 301
>SB_41748| Best HMM Match : Transposase_14 (HMM E-Value=0.79)
Length = 270
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 158 PKGFAFHLVPMWAFLNSLS 102
PKG+ F +VP+W+ L + S
Sbjct: 10 PKGYRFQIVPLWSSLTNRS 28
>SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)
Length = 292
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -1
Query: 158 PKGFAFHLVPMW-AFLN-SLSAHR 93
PKG+ F +VP+W +F N S+ HR
Sbjct: 251 PKGYRFQIVPLWTSFSNRSVFGHR 274
>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
Length = 63
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 298 GCLNHIEENDEVLVAGFGRKGHA 366
G N +EEN +LV G GRKG++
Sbjct: 39 GNANLLEENRLILVTGDGRKGYS 61
>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
Length = 794
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -1
Query: 344 PATNTSSFSSMWLRQPSRG-TNAVTFLPFLMSC--TRTHLRMAEFGC 213
P T TSS SSM+++ S G A F+ S TRT + +A F C
Sbjct: 711 PGTVTSSESSMYIKFHSNGNVTAAGFMATYTSAWSTRTIVLIAVFSC 757
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 335 NTSSFSSMWLRQPSRGTNAVTFLPFLM-SCTRTHLRMAEFGCLASTPTFSRTMPLA 171
NT FS + S G T F++ +CTR GC +STP +RT+ A
Sbjct: 1391 NTRLFSGLDKAITSSGRKPYTLYSFILKACTRA-------GCSSSTPASARTLEAA 1439
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,272,848
Number of Sequences: 59808
Number of extensions: 408726
Number of successful extensions: 1627
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -