Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L24
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   239   8e-64
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   230   4e-61
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    34   0.065
At3g17900.1 68416.m02280 expressed protein                             28   4.3  
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    28   4.3  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   4.3  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   4.3  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       27   5.7  
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P...    27   7.5  
At1g35560.1 68414.m04415 TCP family transcription factor, putati...    27   7.5  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    27   7.5  
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g...    27   7.5  
At5g49110.1 68418.m06079 expressed protein  ; expression support...    27   9.9  
At4g10550.1 68417.m01727 subtilase family protein contains simil...    27   9.9  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  239 bits (585), Expect = 8e-64
 Identities = 110/143 (76%), Positives = 124/143 (86%)
 Frame = +1

Query: 34  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 213
           MGK RG+   RK    R  QRWADK++KK+H+G  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 393
           QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 394 KVVKVANVSLLALYKEKKERPRS 462
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  230 bits (563), Expect = 4e-61
 Identities = 108/143 (75%), Positives = 121/143 (84%)
 Frame = +1

Query: 34  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 213
           MGK RG+   RK    R  QRWADK +KK++ G  WK  PF  +SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59

Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 393
           QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 394 KVVKVANVSLLALYKEKKERPRS 462
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 33.9 bits (74), Expect = 0.065
 Identities = 24/65 (36%), Positives = 38/65 (58%)
 Frame = +1

Query: 211 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 390
           K+PNSA RK  +V+L  N   + A +P +G  ++ +E+  VL+ G GR    V D PGV+
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94

Query: 391 FKVVK 405
              ++
Sbjct: 95  SHCIR 99


>At3g17900.1 68416.m02280 expressed protein
          Length = 838

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 243 NTLTNG*IRLLGFNANFFEDDALSMRCTTEGVRLPSR 133
           N   +G   LL F     E D  S+RC  EG+ +P R
Sbjct: 441 NGQKSGTEELLSFRGVALERDRFSVRCGLEGICIPGR 477


>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 287  TNAVTFLPFLMSCTRTHLRMAEFGCLASTPTFSRTMPLA*DAPPKGFA 144
            +N  T   FL+  + TH+ + EFG   +T T+   +P A  +PP   A
Sbjct: 2161 SNHPTMPLFLVGSSNTHIYLWEFGNERATATYG-VLPAANVSPPYALA 2207


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  WADKEFKKAHMGTRWKANPFGGASHAKG 180
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  WADKEFKKAHMGTRWKANPFGGASHAKG 180
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 350 PNPATNTSSFSSMWLRQP-SRGTNAVTFLPFLMSCTR 243
           P PA++T SFSS     P S     ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336


>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At1g25886, At4g03300
          Length = 1312

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 259 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 420
           K  KK +  VP+      + E D+V   GF  K   V D+P  + +VV +  NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873


>At1g35560.1 68414.m04415 TCP family transcription factor, putative
           similar to PCF2 (GI:2580440) and PCF1 (GI:2580438)
           [Oryza sativa]
          Length = 341

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 401 TTLNLTPGMSPTAWPLRPNPATNTSSFSSMWL 306
           +T + T  M P  W L P PA +T+  S+ W+
Sbjct: 212 STRSRTQNMIPPMWALAPTPA-STNGGSAFWM 242


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 407 TLTTLNLTPGMSPTAWP 357
           T TT+N +PG  P +WP
Sbjct: 587 TKTTINTSPGKLPVSWP 603


>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
           P-glycoprotein GI:4204793 from [Solanum tuberosum]
          Length = 1227

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 24/79 (30%), Positives = 31/79 (39%)
 Frame = -1

Query: 410 ATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLR 231
           A    LN TP +  +  PL   P T T+S     + QP     A   +  L S  R   +
Sbjct: 601 AASPNLNHTPSLPVSTKPLPELPITETTSSIHQSVNQPDTTKQAKVTVGRLYSMIRPDWK 660

Query: 230 MAEFGCLASTPTFSRTMPL 174
               G L S    S+ MPL
Sbjct: 661 YGLCGTLGSFIAGSQ-MPL 678


>At5g49110.1 68418.m06079 expressed protein  ; expression supported by
            MPSS
          Length = 1487

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -3

Query: 450  LLLFFVQS*KRHVCY-----LNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRH 286
            LLLF +Q  +  V +     +N +K +++ + + + F  E C  +LI L  V +  + RH
Sbjct: 1308 LLLFQIQEQQESVSHNSKGIINKIKQENKCIPDLI-FQIEDCERYLIQLSKVTKLNLLRH 1366


>At4g10550.1 68417.m01727 subtilase family protein contains
           similarity to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana]
          Length = 778

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 97  WADKEFKKAHMGTRWKANPFGGASHAKG 180
           W+    + A + T WK +PFG    A+G
Sbjct: 576 WSPAAIRSAIVTTAWKTDPFGEQIFAEG 603


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,374,689
Number of Sequences: 28952
Number of extensions: 264307
Number of successful extensions: 699
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)