Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L23
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    28   0.53 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   1.6  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   1.6  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    24   8.6  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    24   8.6  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    24   8.6  

>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 407 VNFTEKQSALNLYERHHSICKTLR 336
           +NF   +  L  Y+R HSIC  L+
Sbjct: 290 INFVNTEQKLRFYDRLHSICSKLK 313


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 343 LSGETVIYIIDDVNSRIIE 287
           ++ ETV+YIID +N  ++E
Sbjct: 900 MAAETVVYIIDKLNQSVLE 918


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 13  REEPSPPVAVDALPNMAQDPICEKMVDLIPELPAVPE 123
           ++EP P + +D+L +++ +P+  K++    +   VPE
Sbjct: 61  KDEPLPTLKLDSLNDISGEPVIPKIIHQTWKTTEVPE 97


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 135 FSFQFWYCGKFRNQIYHFLTYGILCHVWER 46
           +  Q W  G F   I+ F+ + + C+VWE+
Sbjct: 301 YLLQIW--GGFFLVIFAFVLFDLDCYVWEK 328


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 190  FVLGFNWPRRHHWTSPATFQFSVL 119
            F+LGF   R H W  P + Q + L
Sbjct: 973  FILGFAVKRSHGWVMPRSDQKNAL 996


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 136 FQFSVLVLREVQESNLPFSHIWDPVPCL 53
           F+++  +LRE++   +  S++  P+ CL
Sbjct: 170 FEYANFILRELEHQQMVSSNVSRPIICL 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,425
Number of Sequences: 5004
Number of extensions: 32071
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)