Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L23
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0043 + 14016958-14017106,14017198-14017291,14018488-140185...    31   0.51 
10_08_0748 - 20277623-20277736,20277956-20279425                       28   2.7  
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819...    28   3.6  
09_04_0180 + 15367737-15367755,15368874-15369739                       27   4.8  
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573...    27   6.3  
07_01_0310 + 2209084-2209554                                           27   6.3  
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911     27   8.3  

>03_03_0043 +
           14016958-14017106,14017198-14017291,14018488-14018582,
           14018658-14018825,14019091-14019163,14019236-14019288,
           14019720-14019811,14020141-14020193,14020272-14020397,
           14020710-14020955
          Length = 382

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 183 WVLIGHDDIIGRLLQHFSFQFW--YCGKFRNQIYHFLTYGILCHV 55
           W+L+ H  +   ++  F    W  + G F  +I HFLT+G   H+
Sbjct: 5   WLLVAHGSVTALVVVSFLCGQWPIFEGTFVQRINHFLTFGAYHHL 49


>10_08_0748 - 20277623-20277736,20277956-20279425
          Length = 527

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 172 WPRRHHWTSPATFQFSVLVLREV 104
           + R HHWT   ++ F+V+V+R V
Sbjct: 370 YDREHHWTVSVSWGFAVMVVRGV 392


>02_05_0833 +
           32080845-32081118,32081483-32081663,32081825-32081999,
           32082088-32082220,32082303-32082373,32082738-32082821,
           32083106-32083196,32083315-32083835,32083932-32084096,
           32084181-32084399,32084859-32084986,32085104-32085293,
           32085478-32085561,32085643-32085740,32086127-32086391,
           32086511-32086673,32086792-32086972,32087299-32087370,
           32087473-32087614
          Length = 1078

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +1

Query: 4   RGQREEPSPPVAVDALPNMAQDPICEKMVDLIPELPAVPELKTEMLQETSNDVV 165
           + ++E P PP A+ A+P+++   I ++ + +  E+  +  +K       +NDVV
Sbjct: 605 KDKQETPDPPEALKAVPSLSLQDIPKEPIHVPIEVGEINGVKVLQHDLFTNDVV 658


>09_04_0180 + 15367737-15367755,15368874-15369739
          Length = 294

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 31  PVAVDALPNMAQDPICEKMVDLIPELPAVPELKTEM 138
           PV  D L  +A+DP  E + DL PE     EL+ E+
Sbjct: 38  PVEDDVL-ELAEDPALEPLPDLDPEPEVEAELEAEL 72


>10_02_0137 -
           5730778-5730873,5732137-5732334,5732413-5732625,
           5732748-5732870,5733726-5733841,5734530-5734897,
           5735498-5735649,5736557-5736715,5737773-5737946
          Length = 532

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 79  EKMVDLIPELPAVPELKTE 135
           E+  DL PE+PA PE+K +
Sbjct: 306 EERADLAPEIPAPPEIKQD 324


>07_01_0310 + 2209084-2209554
          Length = 156

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 28  PPV-AVDALPNMAQDPICEKMVDLIPELPAVPELKT 132
           PP+ AV  +PN A  P+       +P +PAVP + T
Sbjct: 45  PPIPAVPTVPNAALPPMPAVPKVALPPMPAVPAVPT 80


>04_03_0776 -
          19463473-19464252,19464354-19464849,19465460-19465911
          Length = 575

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 78 TYGILCHVWERVDRDRRRGLF 16
          T  ++C VW  ++R  RRG+F
Sbjct: 24 TVSLVCKVWYEIERLSRRGVF 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,155,767
Number of Sequences: 37544
Number of extensions: 189480
Number of successful extensions: 514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)