Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L23
(425 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24335| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 27 4.9
SB_57305| Best HMM Match : rve (HMM E-Value=6.6e-22) 27 6.5
SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_12365| Best HMM Match : rve (HMM E-Value=0.00031) 27 6.5
SB_6898| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_5129| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_4292| Best HMM Match : rve (HMM E-Value=0.0023) 27 6.5
SB_40212| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22) 27 6.5
SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17) 27 6.5
SB_25480| Best HMM Match : rve (HMM E-Value=6.6e-22) 27 6.5
SB_28609| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_24335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 7 GQREEPSPPVAVDALPNMAQDPICEKMVDLIPELPAVPELKTEMLQE 147
G +PSPPV+ ALPN + + +C L E+ AV L ++L++
Sbjct: 81 GDTLKPSPPVSSAALPN-SDNLVCNNETVLAEEVHAV--LSVDLLED 124
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 22 PSPPVAVDALPNMAQDPICEKMVDLIPELPAVPELKTEMLQ 144
P+ P V A+P + P ++V +PE+ AVPE + L+
Sbjct: 144 PAVPEIVPAVPEIV--PAVPEVVPAVPEVVAVPEPPVDRLE 182
>SB_57305| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 351
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 94 LIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLT 210
+IP +P +P T + SN+V + PK E H T
Sbjct: 292 VIPAIPQLPPESTNNPTQLSNNVTASPTPPKSSERQHET 330
>SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 938
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 94 LIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLT 210
+IP +P +P T + SN+V + PK E H T
Sbjct: 879 VIPAIPQLPPESTNNPTQLSNNVTASPTPPKSSERQHET 917
>SB_12365| Best HMM Match : rve (HMM E-Value=0.00031)
Length = 290
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 94 LIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLT 210
+IP +P +P T + SN+V + PK E H T
Sbjct: 231 VIPAIPQLPPESTSNPTQLSNNVTASPTPPKSSERQHET 269
>SB_6898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 94 LIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLT 210
+IP +P +P T + SN+V + PK E H T
Sbjct: 90 VIPAIPQLPPESTNNPTQLSNNVTASPTPPKSSERQHET 128
>SB_5129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 94 LIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLT 210
+IP +P +P T + SN+V + PK E H T
Sbjct: 183 VIPAIPQLPPESTNNPTQLSNNVTASPTPPKSSERQHET 221
>SB_4292| Best HMM Match : rve (HMM E-Value=0.0023)
Length = 227
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 94 LIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLT 210
+IP +P +P T + SN+V + PK E H T
Sbjct: 171 VIPAIPQLPPESTNNPTQLSNNVTASPTPPKSSERQHET 209
>SB_40212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 94 LIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLT 210
+IP +P +P T + SN+V + PK E H T
Sbjct: 90 VIPAIPQLPPESTNNPTQLSNNVTASPTPPKSSERQHET 128
>SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 875
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 94 LIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLT 210
+IP +P +P T + SN+V + PK E H T
Sbjct: 816 VIPAIPQLPPESTNNPTQLSNNVTASPTPPKSSERQHET 854
>SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17)
Length = 890
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 94 LIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLT 210
+IP +P +P T + SN+V + PK E H T
Sbjct: 831 VIPAIPQLPPESTNNPTQLSNNVTASPTPPKSSERQHET 869
>SB_25480| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 373
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 94 LIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLT 210
+IP +P +P T + SN+V + PK E H T
Sbjct: 314 VIPAIPQLPPESTNNPTQLSNNVTASPTPPKSSERQHET 352
>SB_28609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -3
Query: 138 HFSFQFWYCGKFRNQIYHFLTYGI-LCHVWERVDRDRRR 25
HF + NQI F T + LC+ W DRD R
Sbjct: 6 HFGINNQDKQRMENQICRFSTLDLRLCYDWRNCDRDDNR 44
>SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 179 F*LATTTSLDVSCNISVFSSGTAGSSGIKSTIFSHMGSCAM 57
F +A TTSL V I +S G +G I+S SC M
Sbjct: 228 FVIAATTSLTVLGPIGALASALLGIAGTIYDIYSSYPSCNM 268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,015,502
Number of Sequences: 59808
Number of extensions: 222835
Number of successful extensions: 536
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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