Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L23
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20861-9|AAN84854.1|  192|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U20861-8|AAA62297.3|  372|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U41553-2|AAA83292.1|  476|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AY652946-1|AAT73713.1|  708|Caenorhabditis elegans guanylate cyc...    26   9.8  
AF038609-4|AAU87824.1|  708|Caenorhabditis elegans Guanylyl cycl...    26   9.8  

>U20861-9|AAN84854.1|  192|Caenorhabditis elegans Hypothetical
           protein C28H8.9b protein.
          Length = 192

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 13  REEPSPPVAVDALPNMAQDPICEKMVDLIPELPAV-PELKTEMLQETSNDVVV 168
           RE PS  VA+D L      P  E + D   +   + P  +T++ +E  +D V+
Sbjct: 91  RENPSIQVAIDHLTPQVVGPTTESVSDSSNDSTTIRPSRQTQIKEEYRDDYVL 143


>U20861-8|AAA62297.3|  372|Caenorhabditis elegans Hypothetical
           protein C28H8.9a protein.
          Length = 372

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 13  REEPSPPVAVDALPNMAQDPICEKMVDLIPELPAV-PELKTEMLQETSNDVVV 168
           RE PS  VA+D L      P  E + D   +   + P  +T++ +E  +D V+
Sbjct: 91  RENPSIQVAIDHLTPQVVGPTTESVSDSSNDSTTIRPSRQTQIKEEYRDDYVL 143


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 10  QREEPSPPVAVDALPNMAQDPICEKMVDLIPELPAVP 120
           ++E  + PVA    PN+ Q+P+   +   +   P +P
Sbjct: 320 EQESCTRPVAEVTRPNVIQNPVVRPVATKVNNFPGIP 356


>U41553-2|AAA83292.1|  476|Caenorhabditis elegans Hypothetical
           protein ZK1193.3 protein.
          Length = 476

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 147 LLQHFSFQFWYCGKF 103
           +L+HF FQ  YCG+F
Sbjct: 15  ILEHFLFQGCYCGEF 29


>AY652946-1|AAT73713.1|  708|Caenorhabditis elegans guanylate
           cyclase-like protein protein.
          Length = 708

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 87  HFLTYGILCHVWERVDRDR 31
           HFL     C VW+ VDRD+
Sbjct: 606 HFLEKNEKCSVWDIVDRDK 624


>AF038609-4|AAU87824.1|  708|Caenorhabditis elegans Guanylyl cyclase
           protein 37 protein.
          Length = 708

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 87  HFLTYGILCHVWERVDRDR 31
           HFL     C VW+ VDRD+
Sbjct: 606 HFLEKNEKCSVWDIVDRDK 624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,105,408
Number of Sequences: 27780
Number of extensions: 180883
Number of successful extensions: 523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)