Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L23
(425 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27870.1 68414.m03415 hypothetical protein 30 0.75
At1g77815.1 68414.m09064 hypothetical protein 29 1.00
At5g28480.1 68418.m03462 hypothetical protein 29 1.3
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 29 1.3
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 29 1.3
At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family... 28 3.0
At2g16100.1 68415.m01846 hypothetical protein 28 3.0
At3g18620.1 68416.m02366 zinc finger (DHHC type) family protein ... 27 4.0
At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein simil... 27 5.3
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR... 27 7.0
At5g52290.1 68418.m06489 hypothetical protein 26 9.3
At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein simil... 26 9.3
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident... 26 9.3
>At1g27870.1 68414.m03415 hypothetical protein
Length = 213
Score = 29.9 bits (64), Expect = 0.75
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 178 FNWPRRHHWTSPATFQFSVLVLREVQESNLPFSHIWDP 65
FNW RRHH +PA +L +Q +L +H W P
Sbjct: 166 FNWIRRHH-NTPA----DILAKAPLQNQSLFLNHFWVP 198
>At1g77815.1 68414.m09064 hypothetical protein
Length = 100
Score = 29.5 bits (63), Expect = 1.00
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 178 FNWPRRHHWTSPATFQFSVLVLREVQESNLPFSHIWDP 65
FNW +RHH +PA +L +Q +L +H+W P
Sbjct: 53 FNWIKRHH-NTPA----DILAKAPLQNQSLFLNHLWVP 85
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 25 SPPVAVDALPNMAQDPICEKMVDLIPELPAVPELKTEMLQETSNDVV 165
SP V V + +D I + V IPE AVPE E+L + +DV+
Sbjct: 843 SPTVVVSKVLTQLKDDILAENVSKIPEKVAVPE---EVLTQLKDDVL 886
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 25 SPPVAVDALPNMAQDPICEKMVDLIPELPAVPELKTEMLQETSNDVV 165
SP V V + +D I + V IPE AVPE E+L + +DV+
Sbjct: 813 SPTVVVSKVLTQLKDDILAENVSKIPEKVAVPE---EVLTQLKDDVL 856
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 25 SPPVAVDALPNMAQDPICEKMVDLIPELPAVPELKTEMLQETSNDVV 165
SP V V + +D I + V IPE AVPE E+L + +DV+
Sbjct: 817 SPTVVVSKVLTQLKDDILAENVSKIPEKVAVPE---EVLTQLKDDVL 860
>At5g16620.1 68418.m01946 hydroxyproline-rich glycoprotein family
protein contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 447
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 28 PPVAVDALPNMAQDPICEKMV-DLIPELPAVPELKTEMLQ 144
P ++V+AL M +DP +KMV +PE PE ML+
Sbjct: 297 PGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLK 336
>At2g16100.1 68415.m01846 hypothetical protein
Length = 250
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 178 FNWPRRHHWTSPATFQFSVLVLREVQESNLPFSHIWDP 65
FNW RRHH +PA + +Q +L +H W P
Sbjct: 203 FNWIRRHH-NTPA----DIFAKGTLQNQSLFLNHFWVP 235
>At3g18620.1 68416.m02366 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529 DHHC zinc finger domain
Length = 345
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 267 TI*NYCNK*RALLSRHCRVCQM 202
T NYC+K ++ + HCR C M
Sbjct: 148 TFCNYCSKPKSPRTHHCRTCGM 169
>At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein similar
to SP|P39540 Elongation of fatty acids protein 1
{Saccharomyces cerevisiae}; contains Pfam profile
PF01151: GNS1/SUR4 family
Length = 278
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 93 IYHFLTYGILCHVWERVDRDRRRGLFPLA 7
+YH T ++C++W R R+ +FP+A
Sbjct: 155 VYHHATVVVMCYLWLRT----RQSMFPIA 179
>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1188
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 158 MSSWPIKTQNKKKCII*HTRQCLDR 232
+S W IK +N+ +CI TR+ L R
Sbjct: 152 ISGWDIKNRNEAECIADITREILKR 176
>At5g52290.1 68418.m06489 hypothetical protein
Length = 1569
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 67 DPICEKMVDLIPELPAVPELKTEMLQETSNDVVVAN*NPKQKEMHHLTH 213
D I +K I EL PEL EM++ +D+++ N Q++++ + +
Sbjct: 105 DAIADKATPKIIELET-PELDFEMVKYEGSDIILQNSKDIQEQIYSVDY 152
>At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein similar
to SP|P25358 Elongation of fatty acids protein 2 (GNS1
protein) (V-SNARE bypass mutant gene 2 protein)
{Saccharomyces cerevisiae}; contains Pfam profile
PF01151: GNS1/SUR4 family
Length = 298
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 93 IYHFLTYGILCHVWERVDRDRRRGLFPL 10
+YH T ILC++W R R+ +FP+
Sbjct: 152 VYHHATVVILCYLWLRT----RQSMFPV 175
>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
identical to ania-6a type cyclin [Arabidopsis thaliana]
GI:13924511
Length = 416
Score = 26.2 bits (55), Expect = 9.3
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -1
Query: 401 FTEKQSALNLYERHHSICKTLR*NCNLHY*RRKFSNYRT*FDITPQYRIIVINKGLFYLD 222
F+E + L+ ERH I K + C++ + + SNY + P+ R N L
Sbjct: 127 FSELKVELSRTERH--ILKEMGFVCHVEHPHKFISNYLATLETPPELRQEAWNLANDSLR 184
Query: 221 TVECVR 204
T CVR
Sbjct: 185 TTLCVR 190
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,425,426
Number of Sequences: 28952
Number of extensions: 160421
Number of successful extensions: 384
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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