Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L22
         (574 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D5639D Cluster: PREDICTED: similar to CG31720-PA...    34   2.1  
UniRef50_A7FC30 Cluster: Putative uncharacterized protein; n=1; ...    33   3.6  
UniRef50_Q62CQ2 Cluster: Sensor protein; n=22; Burkholderia|Rep:...    33   4.8  
UniRef50_Q60XQ7 Cluster: Putative uncharacterized protein CBG185...    33   6.3  

>UniRef50_UPI0000D5639D Cluster: PREDICTED: similar to CG31720-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG31720-PA - Tribolium castaneum
          Length = 881

 Score = 34.3 bits (75), Expect = 2.1
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = +1

Query: 322 FIYTCICYINFRKS*VFVVILIFY*HGHALISYYDMIY-KTLLIYSKSYLKDLLLQSKFF 498
           ++YT I  I    S VF+V+ I Y   +   +    ++ KTL+ Y  +YL   LL S F 
Sbjct: 565 YVYTSIAMII---SCVFLVLTILY---YCFSNEKQTLFGKTLISYCFTYLLTFLLLSYFT 618

Query: 499 LSSWKRFHRRITC-YYVFCVIY 561
           L  + + H + TC  + F V+Y
Sbjct: 619 LVEFAKGHYQTTCSVFAFFVLY 640


>UniRef50_A7FC30 Cluster: Putative uncharacterized protein; n=1;
           Yersinia pseudotuberculosis IP 31758|Rep: Putative
           uncharacterized protein - Yersinia pseudotuberculosis IP
           31758
          Length = 98

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 11/23 (47%), Positives = 20/23 (86%)
 Frame = +1

Query: 418 YYDMIYKTLLIYSKSYLKDLLLQ 486
           +YD+IY T +IYSK YL++++++
Sbjct: 14  FYDLIYNTTVIYSKCYLQEVIMR 36


>UniRef50_Q62CQ2 Cluster: Sensor protein; n=22; Burkholderia|Rep:
           Sensor protein - Burkholderia mallei (Pseudomonas
           mallei)
          Length = 401

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 529 FVYGIFSKKTRRIYSVIVGPLNRTLNKLIM 440
           F  G F+ + R   SVI+GPL RTLN L M
Sbjct: 149 FTGGRFNTRARESRSVIIGPLARTLNALAM 178


>UniRef50_Q60XQ7 Cluster: Putative uncharacterized protein CBG18567;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG18567 - Caenorhabditis
           briggsae
          Length = 324

 Score = 32.7 bits (71), Expect = 6.3
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 373 VVILIFY*HGHALISYYDMIYKTLLIYSKSYLKDLLLQSKFFLS-SWKRFHRRITCYYVF 549
           V+I I++ +    ++Y+DM +K+L+I    +  D       F+S  W   H +    ++F
Sbjct: 71  VLIYIYHRNCVGYLNYFDMFFKSLVIIFTEFAADSGAWISIFMSFKWSWNHAKKVATWIF 130

Query: 550 CVIYL 564
            ++++
Sbjct: 131 LILFI 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,371,117
Number of Sequences: 1657284
Number of extensions: 7723741
Number of successful extensions: 15374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15369
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)