Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L22
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   6.0  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   7.9  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 119 SHKIYAYS*LIKSTLYIFYSPIF*HLSGETVVSIELPFNFNCNKICFQ 262
           S+ +YA+S  +++   I    I  HL+      ++LP NF    +CF+
Sbjct: 289 SNLVYAHSQAVQTRFLIADPEITTHLANLVSPDVDLPQNFKA--VCFE 334


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 409 LISYYDMIYKTLLIYSKSYLKDLLLQSKFF 498
           L+ Y+  +Y+T ++Y   Y++ +    +FF
Sbjct: 80  LLFYFSGLYRTTIVYPSRYVQQVNKAMRFF 109


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 505 KTRRIYSVIVGPLNRTLNKLIMFYKSYHNN*LAHDHVSKRLVSLQK 368
           +T  IY+VI+ P      ++       +NN L+H  VS  ++  +K
Sbjct: 213 RTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEK 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,372
Number of Sequences: 5004
Number of extensions: 37871
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)