Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L22
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43594| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)           28   6.2  
SB_47471| Best HMM Match : WD40 (HMM E-Value=0.014)                    27   8.2  
SB_30629| Best HMM Match : ERG4_ERG24 (HMM E-Value=0)                  27   8.2  

>SB_43594| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
          Length = 342

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 463 YLKDLLLQSK---FFLSSWKRFHRRITCYYVFC 552
           + KD+ L+ K      S+WK+ + RI CY  FC
Sbjct: 78  FTKDINLERKGSPISPSTWKKANERILCYLGFC 110


>SB_47471| Best HMM Match : WD40 (HMM E-Value=0.014)
          Length = 117

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = -3

Query: 146 TMSRHKFCEKLCSCEVISMKQCMRNYISTIYNIHEYCTSINN*IP 12
           T+ + +F   +  C+V+S ++  +  +++    + Y T +NN +P
Sbjct: 53  TLKKARFHSGVLECDVLSRRKITKQRLTSSLTTNYYITLLNNDLP 97


>SB_30629| Best HMM Match : ERG4_ERG24 (HMM E-Value=0)
          Length = 486

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 400 GHALISYYDMIYKTLLIYSKSYLKDLLLQSKF 495
           GH L  Y+ +IY T+L+  +SY  D+  + K+
Sbjct: 442 GHVL-PYFYLIYMTVLLVHRSYRDDVRCREKY 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,734
Number of Sequences: 59808
Number of extensions: 247563
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)