Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L22
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z29094-15|CAA82341.3|  672|Caenorhabditis elegans Hypothetical p...    27   7.2  

>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 142 IVN*IYIVYFLFTDLLAF 195
           IVN IYI+YF FT  +AF
Sbjct: 60  IVNAIYILYFFFTLFMAF 77


>Z29094-15|CAA82341.3|  672|Caenorhabditis elegans Hypothetical
           protein C07A9.11 protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 278 VQPKYYEEVSHICSCLYILVFVILISEKV 364
           VQPKYY+E+      +  + ++ LIS +V
Sbjct: 504 VQPKYYKEIYSYSGFIMSIAWIYLISSEV 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,291,815
Number of Sequences: 27780
Number of extensions: 204435
Number of successful extensions: 459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)