Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L22
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41680.2 68418.m05065 protein kinase family protein contains ...    27   8.9  

>At5g41680.2 68418.m05065 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like protein kinase (GI:4008006) [Arabidopsis
           thaliana]; similar to receptor-like kinase RHG1
           (GI:21239380) (GI:21239382) [Glycine max]
          Length = 333

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 104 HMNITSHKIYAYS*LIKSTLYIFYSP--IF*HLSGETVVSIE 223
           H N+   K Y YS + K  +Y +YS   +F  L GE+ V ++
Sbjct: 111 HDNVAELKAYYYSKIDKLAVYSYYSQGNLFEMLHGESQVPLD 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,120,000
Number of Sequences: 28952
Number of extensions: 171916
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)