Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L21
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    63   2e-11
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    27   2.0  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   3.5  

>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +2

Query: 8   GKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 112
           GK+PE+IRKTFNI NDFT  EE+Q+RKENEW E++
Sbjct: 127 GKSPEDIRKTFNIPNDFTPEEEEQIRKENEWAEDR 161


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 368 DTAVNSYGINIIFDFTLISRFKDA*HVFKLTFHSTI 475
           D  +++YGI  IF+   +    D  HV   T H  +
Sbjct: 190 DRGLSAYGIECIFEMNRLGMMVDLSHVSHRTMHDAL 225


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 54  ISQQLRKIKCVKKMSGVKRSNMW 122
           + +QL ++KC  K +  K+ N W
Sbjct: 767 LPEQLSRLKCTSKANFAKKENAW 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,822
Number of Sequences: 5004
Number of extensions: 28678
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)