Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L21
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)          29   2.7  
SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)         27   6.3  

>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
          Length = 919

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 215 CFPIVKFNCVIKVLSYFLNLVGLYSLTISFGIIRIFYKFSI 337
           C  ++K N  I V SY + LV ++ L I+ G++ + Y+  I
Sbjct: 78  CVAVIKENRFILV-SYLIMLVLIFILEIATGVVAVIYRSEI 117


>SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)
          Length = 353

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 14  TPEEIRKTFNIK--NDFTAAE-EDQVRKENEWCEEK*YVE 124
           T +E+R TFNIK  N F A E ED+  +  E  + K  VE
Sbjct: 297 TEKEVRNTFNIKLRNRFQALEQEDEEERGEEVVDAKEEVE 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,319,044
Number of Sequences: 59808
Number of extensions: 177395
Number of successful extensions: 320
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)