Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L21
         (489 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47087-1|CAA87392.1|  163|Homo sapiens RNA polymerase II elongat...    73   7e-13
U37558-1|AAA79202.1|  150|Homo sapiens OCP2 protein.                   73   7e-13
U33760-1|AAC50241.1|  163|Homo sapiens cyclin A/CDK2-associated ...    73   7e-13
BC065730-1|AAH65730.1|  163|Homo sapiens S-phase kinase-associat...    73   7e-13
BC020798-1|AAH20798.1|  163|Homo sapiens S-phase kinase-associat...    73   7e-13
BC009839-1|AAH09839.1|  163|Homo sapiens S-phase kinase-associat...    73   7e-13
BC025673-1|AAH25673.1|  160|Homo sapiens S-phase kinase-associat...    49   8e-06

>Z47087-1|CAA87392.1|  163|Homo sapiens RNA polymerase II elongation
           factor-like protein protein.
          Length = 163

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +2

Query: 5   EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 112
           +GKTPEEIRKTFNIKNDFT  EE QVRKEN+WCEEK
Sbjct: 128 KGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163


>U37558-1|AAA79202.1|  150|Homo sapiens OCP2 protein.
          Length = 150

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +2

Query: 5   EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 112
           +GKTPEEIRKTFNIKNDFT  EE QVRKEN+WCEEK
Sbjct: 115 KGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 150


>U33760-1|AAC50241.1|  163|Homo sapiens cyclin A/CDK2-associated p19
           protein.
          Length = 163

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +2

Query: 5   EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 112
           +GKTPEEIRKTFNIKNDFT  EE QVRKEN+WCEEK
Sbjct: 128 KGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163


>BC065730-1|AAH65730.1|  163|Homo sapiens S-phase kinase-associated
           protein 1A (p19A) protein.
          Length = 163

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +2

Query: 5   EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 112
           +GKTPEEIRKTFNIKNDFT  EE QVRKEN+WCEEK
Sbjct: 128 KGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163


>BC020798-1|AAH20798.1|  163|Homo sapiens S-phase kinase-associated
           protein 1A (p19A) protein.
          Length = 163

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +2

Query: 5   EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 112
           +GKTPEEIRKTFNIKNDFT  EE QVRKEN+WCEEK
Sbjct: 128 KGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163


>BC009839-1|AAH09839.1|  163|Homo sapiens S-phase kinase-associated
           protein 1A (p19A) protein.
          Length = 163

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +2

Query: 5   EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 112
           +GKTPEEIRKTFNIKNDFT  EE QVRKEN+WCEEK
Sbjct: 128 KGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163


>BC025673-1|AAH25673.1|  160|Homo sapiens S-phase kinase-associated
           protein 1A (p19A) protein.
          Length = 160

 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = +2

Query: 5   EGKTPEEIRKTFNIKNDFTAAEEDQV 82
           +GKTPEEIRKTFNIKNDFT  EE QV
Sbjct: 128 KGKTPEEIRKTFNIKNDFTEEEEAQV 153


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,565,136
Number of Sequences: 237096
Number of extensions: 884019
Number of successful extensions: 1166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)