Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L21
(489 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81084-6|CAB03110.1| 176|Caenorhabditis elegans Hypothetical pr... 66 1e-11
Z81072-16|CAB03027.1| 176|Caenorhabditis elegans Hypothetical p... 66 1e-11
AF440505-1|AAL34093.1| 170|Caenorhabditis elegans SKR-1 protein. 66 1e-11
Z81084-3|CAB03108.1| 174|Caenorhabditis elegans Hypothetical pr... 60 8e-10
AF440506-1|AAL34094.1| 174|Caenorhabditis elegans SKR-2 protein. 60 8e-10
Z83109-7|CAB05516.1| 167|Caenorhabditis elegans Hypothetical pr... 52 3e-07
AF440507-1|AAL34095.1| 167|Caenorhabditis elegans SKR-3 protein. 52 3e-07
AL117207-10|CAB60402.1| 159|Caenorhabditis elegans Hypothetical... 37 0.007
Z92786-7|CAB07209.1| 145|Caenorhabditis elegans Hypothetical pr... 27 5.5
AF440508-1|AAL34096.1| 144|Caenorhabditis elegans SKR-5 protein. 27 5.5
Z81533-11|CAE17829.1| 355|Caenorhabditis elegans Hypothetical p... 27 7.3
>Z81084-6|CAB03110.1| 176|Caenorhabditis elegans Hypothetical
protein F46A9.5 protein.
Length = 176
Score = 66.5 bits (155), Expect = 1e-11
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GK+PEEIR+TFNIKNDFT EE+Q+RKEN WCE+
Sbjct: 142 KGKSPEEIRRTFNIKNDFTPEEEEQIRKENAWCED 176
>Z81072-16|CAB03027.1| 176|Caenorhabditis elegans Hypothetical
protein F46A9.5 protein.
Length = 176
Score = 66.5 bits (155), Expect = 1e-11
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GK+PEEIR+TFNIKNDFT EE+Q+RKEN WCE+
Sbjct: 142 KGKSPEEIRRTFNIKNDFTPEEEEQIRKENAWCED 176
>AF440505-1|AAL34093.1| 170|Caenorhabditis elegans SKR-1 protein.
Length = 170
Score = 66.5 bits (155), Expect = 1e-11
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GK+PEEIR+TFNIKNDFT EE+Q+RKEN WCE+
Sbjct: 136 KGKSPEEIRRTFNIKNDFTPEEEEQIRKENAWCED 170
>Z81084-3|CAB03108.1| 174|Caenorhabditis elegans Hypothetical
protein F46A9.4 protein.
Length = 174
Score = 60.1 bits (139), Expect = 8e-10
Identities = 22/35 (62%), Positives = 31/35 (88%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GK+P+EIR+ FNIK+DFTA E +Q+RKEN WC++
Sbjct: 140 KGKSPDEIRRAFNIKDDFTAEEREQIRKENAWCDD 174
>AF440506-1|AAL34094.1| 174|Caenorhabditis elegans SKR-2 protein.
Length = 174
Score = 60.1 bits (139), Expect = 8e-10
Identities = 22/35 (62%), Positives = 31/35 (88%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GK+P+EIR+ FNIK+DFTA E +Q+RKEN WC++
Sbjct: 140 KGKSPDEIRRAFNIKDDFTAEEREQIRKENAWCDD 174
>Z83109-7|CAB05516.1| 167|Caenorhabditis elegans Hypothetical
protein F44G3.6 protein.
Length = 167
Score = 51.6 bits (118), Expect = 3e-07
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GKTP +IR FNI+NDF+ E + ++KEN WCE+
Sbjct: 133 KGKTPSQIRTLFNIENDFSEEEREAMKKENAWCED 167
>AF440507-1|AAL34095.1| 167|Caenorhabditis elegans SKR-3 protein.
Length = 167
Score = 51.6 bits (118), Expect = 3e-07
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GKTP +IR FNI+NDF+ E + ++KEN WCE+
Sbjct: 133 KGKTPSQIRTLFNIENDFSEEEREAMKKENAWCED 167
>AL117207-10|CAB60402.1| 159|Caenorhabditis elegans Hypothetical
protein Y60A3A.18 protein.
Length = 159
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GKTP ++R F I N F+ E + ++K N WCE+
Sbjct: 126 KGKTPSQVRTLFKIDN-FSEEELEAMKKGNAWCED 159
>Z92786-7|CAB07209.1| 145|Caenorhabditis elegans Hypothetical
protein F47H4.10 protein.
Length = 145
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKND 55
+GK+PEEIR FN+ N+
Sbjct: 125 KGKSPEEIRAVFNLGNE 141
>AF440508-1|AAL34096.1| 144|Caenorhabditis elegans SKR-5 protein.
Length = 144
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKND 55
+GK+PEEIR FN+ N+
Sbjct: 124 KGKSPEEIRAVFNLGNE 140
>Z81533-11|CAE17829.1| 355|Caenorhabditis elegans Hypothetical
protein F36G9.16 protein.
Length = 355
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +2
Query: 212 NCFP---IVKFNCVIKVLSYFLNLVGLYSLTISFGIIRIFYKFSIL*KGFHHSALDTAVN 382
NC P V F I + S ++++ L +SFG+ + IL A D ++
Sbjct: 106 NCIPPETYVVFFVYIYIYSETVSMIA-QKLAVSFGVAMAILRVVILKYPLSRRAQDLIMS 164
Query: 383 SYGINIIF 406
GI IIF
Sbjct: 165 GSGIRIIF 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,014,428
Number of Sequences: 27780
Number of extensions: 155325
Number of successful extensions: 378
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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