Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L21
(489 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit... 63 1e-10
At1g75950.1 68414.m08821 E3 ubiquitin ligase SCF complex subunit... 60 6e-10
At4g34470.1 68417.m04901 E3 ubiquitin ligase SCF complex subunit... 59 1e-09
At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit... 59 1e-09
At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit... 53 1e-07
At2g03170.1 68415.m00270 E3 ubiquitin ligase SCF complex subunit... 52 3e-07
At1g20140.1 68414.m02519 E3 ubiquitin ligase SCF complex subunit... 51 5e-07
At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit... 49 1e-06
At3g25650.1 68416.m03192 Skp1 family protein similar toSkp1 [Med... 49 2e-06
At2g25700.1 68415.m03080 E3 ubiquitin ligase SCF complex subunit... 49 2e-06
At3g60010.1 68416.m06700 E3 ubiquitin ligase SCF complex subunit... 48 3e-06
At2g03160.1 68415.m00269 E3 ubiquitin ligase SCF complex subunit... 48 3e-06
At3g60020.1 68416.m06702 E3 ubiquitin ligase SCF complex subunit... 48 4e-06
At3g21850.1 68416.m02754 E3 ubiquitin ligase SCF complex subunit... 48 4e-06
At2g20160.1 68415.m02357 E3 ubiquitin ligase SCF complex subunit... 46 1e-05
At3g21830.1 68416.m02752 E3 ubiquitin ligase SCF complex subunit... 45 3e-05
At3g21860.1 68416.m02755 E3 ubiquitin ligase SCF complex subunit... 42 2e-04
At3g61415.1 68416.m06878 SKP1 family protein low similarity to S... 33 0.14
At2g45950.1 68415.m05713 SKP1 family protein similar to glycopro... 31 0.55
>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and
PF03931:Skp1 family, tetramerisation domain; identical
to cDNA UFO binding protein UIP2 mRNA, partial cds
GI:3719210
Length = 171
Score = 62.9 bits (146), Expect = 1e-10
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GKTPEEIRKTFNIKNDFT EE++VR+EN+W E
Sbjct: 137 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171
>At1g75950.1 68414.m08821 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At1) E3 ubiquitin ligase; skp1a; identical to
Skp1a GI:3068807, Skp1p GI:1432083 and UIP1 GI:3719209
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and PF03931:
Skp1 family, tetramerisation domain;
Length = 160
Score = 60.5 bits (140), Expect = 6e-10
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GKTPEEIR TFNIKNDFT EE++VR+EN+W E
Sbjct: 126 KGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>At4g34470.1 68417.m04901 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At12), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 152
Score = 59.3 bits (137), Expect = 1e-09
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GKTPEEIR TFNI+NDFT EE+ VRKEN+W E
Sbjct: 118 KGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152
>At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At11), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 152
Score = 59.3 bits (137), Expect = 1e-09
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+GKTPEEIR TFNI+NDFT EE+ VRKEN+W E
Sbjct: 118 KGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152
>At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At18), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 [Arabidopsis thaliana]
Length = 183
Score = 52.8 bits (121), Expect = 1e-07
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2
Query: 11 KTPEEIRKTFNIKNDFTAAEEDQVRKENEW 100
KTPEE+R+ FNI+NDFT EE+++RKEN W
Sbjct: 150 KTPEEVREIFNIENDFTPEEEEEIRKENAW 179
>At2g03170.1 68415.m00270 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At14), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 149
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +2
Query: 11 KTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
KTPEEIR+ FNI+NDFT EE VRKEN W E
Sbjct: 117 KTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149
>At1g20140.1 68414.m02519 E3 ubiquitin ligase SCF complex subunit,
putative similar to Skp1 GI:4959710 from [Medicago
sativa]
Length = 163
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +2
Query: 8 GKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
GKTPE++R FNIKND+T EE +VR EN+W E
Sbjct: 130 GKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163
>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 170
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +2
Query: 14 TPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+PEE+R+ FNI+ND+T EED +RKEN W E
Sbjct: 136 SPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167
>At3g25650.1 68416.m03192 Skp1 family protein similar toSkp1
[Medicago sativa] GI:4959710, fimbriata-associated
protein [Antirrhinum majus] GI:2673870, UIP2
[Arabidopsis thaliana] GI:3719211; contains Pfam profile
PF01466: Skp1 family, dimerisation domain
Length = 177
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/34 (61%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Frame = +2
Query: 11 KTPEEIRKTFNIKNDFTAAEEDQ-VRKENEWCEE 109
KTPEE+R+ FNI+NDFT EE++ +RKEN W E
Sbjct: 134 KTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167
>At2g25700.1 68415.m03080 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At3), putative E3 ubiquitin ligase; similar
to fimbriata-associated protein fap1 GI:2673868 from
[Antirrhinum majus]
Length = 163
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +2
Query: 8 GKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
GKTP ++R+ FNIKND+T EE +VR EN W E
Sbjct: 130 GKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163
>At3g60010.1 68416.m06700 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At13), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 154
Score = 48.4 bits (110), Expect = 3e-06
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +2
Query: 8 GKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
GK P+EIR I+NDFT EE+++RKEN+W E
Sbjct: 121 GKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154
>At2g03160.1 68415.m00269 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At19), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 200
Score = 48.4 bits (110), Expect = 3e-06
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +2
Query: 14 TPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 112
TPEE+R+ FNI+NDFT EE+ +R EN W E+
Sbjct: 159 TPEEVRELFNIENDFTPEEEEAIRNENAWTFEQ 191
>At3g60020.1 68416.m06702 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At5), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 153
Score = 47.6 bits (108), Expect = 4e-06
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +2
Query: 8 GKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 100
GKTP+EIR FNI+ND TA E ++R+EN+W
Sbjct: 120 GKTPDEIRAHFNIENDLTAEEVAKIREENQW 150
>At3g21850.1 68416.m02754 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At9), putative E3 ubiquitin ligase; similar
to Skp1 homolog SKP1a GI:3068807 from [Arabidopsis
thaliana]
Length = 153
Score = 47.6 bits (108), Expect = 4e-06
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+G TPE+IR+ FNI+ND T EE +R+EN+W E
Sbjct: 119 KGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153
>At2g20160.1 68415.m02357 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At17), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 150
Score = 46.4 bits (105), Expect = 1e-05
Identities = 18/30 (60%), Positives = 25/30 (83%)
Frame = +2
Query: 11 KTPEEIRKTFNIKNDFTAAEEDQVRKENEW 100
KT EIR+ FNI+ND+T EE+++RK+NEW
Sbjct: 118 KTVNEIRELFNIENDYTPEEEEELRKKNEW 147
>At3g21830.1 68416.m02752 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At8), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 152
Score = 44.8 bits (101), Expect = 3e-05
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 109
+G TP+++R+ FNI+ND T EE +R+EN+W E
Sbjct: 118 KGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152
>At3g21860.1 68416.m02755 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At10), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 152
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 14 TPEEIRKTFNIKNDFTAAEEDQVRKENEW 100
T E RK FNI+ND+T EE+ VR+EN+W
Sbjct: 121 TVEHTRKFFNIENDYTHEEEEAVRRENQW 149
>At3g61415.1 68416.m06878 SKP1 family protein low similarity to
SP|P52285 Glycoprotein FP21 precursor {Dictyostelium
discoideum}; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 351
Score = 32.7 bits (71), Expect = 0.14
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEE 73
EGKTPEEIR+ F++ +D T E+
Sbjct: 132 EGKTPEEIREIFHLPDDLTEEEK 154
>At2g45950.1 68415.m05713 SKP1 family protein similar to
glycoprotein FP21 SP:P52285 from [Dictyostelium
discoideum]; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 342
Score = 30.7 bits (66), Expect = 0.55
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 5 EGKTPEEIRKTFNIKNDFTAAEE 73
EGK PEEIR+ F++ +D T E+
Sbjct: 132 EGKNPEEIREIFHLPDDLTEEEK 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,214,877
Number of Sequences: 28952
Number of extensions: 134188
Number of successful extensions: 246
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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