Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L20
         (492 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P31920 Cluster: Uncharacterized 35.4 kDa protein in rbc...    35   0.86 
UniRef50_Q7RDQ4 Cluster: Vps26 protein homolog; n=5; Apicomplexa...    33   4.6  
UniRef50_Q8DS10 Cluster: Putative uncharacterized protein; n=1; ...    32   6.0  
UniRef50_Q2LPK4 Cluster: Heterodisulfide reductase, subunit A an...    32   8.0  
UniRef50_Q22Z46 Cluster: Putative uncharacterized protein; n=1; ...    32   8.0  

>UniRef50_P31920 Cluster: Uncharacterized 35.4 kDa protein in
           rbcL-atpE intergenic region; n=1; Euglena gracilis|Rep:
           Uncharacterized 35.4 kDa protein in rbcL-atpE intergenic
           region - Euglena gracilis
          Length = 295

 Score = 35.1 bits (77), Expect = 0.86
 Identities = 20/69 (28%), Positives = 39/69 (56%)
 Frame = +2

Query: 251 FRENILIVATQKRTKRHLNVTFYLTQCKMPVLI**AELYYSKLPRYVDYKSNKCLCFVCY 430
           F +N +I   + +     NV  ++  C+ P      EL+++++PRY + K+N CL F  +
Sbjct: 103 FDKNTIISIEKAKGDSPGNVGGFIINCRDPE----EELFWNRIPRY-ESKNNNCLSFK-F 156

Query: 431 VRRFNLVYK 457
           + ++NL+ K
Sbjct: 157 ITQYNLIEK 165


>UniRef50_Q7RDQ4 Cluster: Vps26 protein homolog; n=5;
           Apicomplexa|Rep: Vps26 protein homolog - Plasmodium
           yoelii yoelii
          Length = 314

 Score = 32.7 bits (71), Expect = 4.6
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -1

Query: 306 FRWRFVRFCVATIKIFSLKYPNKIFESKRLLLNYSVGCLNEVNSIQTQICCPSIINNTLK 127
           F+W+F          F      + F    ++  YS     E++ I   IC P  INNT+K
Sbjct: 120 FKWKFSSVDKQYESYFGKNAELRYFVRLNIIKGYSGNIQKEIDFIVQNICIPPEINNTIK 179

Query: 126 L 124
           +
Sbjct: 180 M 180


>UniRef50_Q8DS10 Cluster: Putative uncharacterized protein; n=1;
           Streptococcus mutans|Rep: Putative uncharacterized
           protein - Streptococcus mutans
          Length = 617

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 12/34 (35%), Positives = 26/34 (76%)
 Frame = +3

Query: 15  ASPIDYTLHFLVYLLIIGYIAFL*INKYNFLHIY 116
           +S + Y++ FL+Y +II YI+++ IN+ ++++ Y
Sbjct: 34  SSYLSYSIVFLIYAIIITYISYISINRGSWMYDY 67


>UniRef50_Q2LPK4 Cluster: Heterodisulfide reductase, subunit A and
           related polyferredoxins; n=9; Deltaproteobacteria|Rep:
           Heterodisulfide reductase, subunit A and related
           polyferredoxins - Syntrophus aciditrophicus (strain SB)
          Length = 1039

 Score = 31.9 bits (69), Expect = 8.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 237 IFESKRLLLNYSVGCLNEVNSIQTQICCPSIINNTLKL 124
           + +++ + +   VGC NE  +   +ICC   I N LKL
Sbjct: 747 VVQARNVAMIQCVGCRNEDRNYCARICCSHAIKNALKL 784


>UniRef50_Q22Z46 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 425

 Score = 31.9 bits (69), Expect = 8.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 297 RFVRFCVATIKIFSLKYPNKIFESKRLLLNYSVGCLNEVNS 175
           RFV FC+  I  +S K  N+IF+     LNY +G +  V +
Sbjct: 182 RFVEFCMKQISEYSKKSENQIFQFTIGRLNYELGDIQIVKT 222


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,867,948
Number of Sequences: 1657284
Number of extensions: 7449978
Number of successful extensions: 13720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13718
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)