Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L20
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   1.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   2.7  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    25   6.2  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.2  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 204 SVGCLNEVNSIQTQICCPSIINNTLKLVFY 115
           S G   + N  ++ + CPS++NN +  VF+
Sbjct: 119 SSGYSLKYNGTESAVACPSLVNNQVYQVFF 148


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 362 LYYSKLPRYVDYKSNKCLCFVCYV 433
           +Y  K  R VDY S  C+C+ C V
Sbjct: 369 VYGKKYDRTVDYWSLGCICYECLV 392


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 162 ICCPSIINNTLKLVFYKYVESYTY*FIKKQY 70
           I C + I+N   LVFY +V+     F K QY
Sbjct: 644 ISCGTTISNFTDLVFYGHVDGKISIFSKTQY 674


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 389 VDYKSNKCLCFVCYVRRF 442
           +D + NKC   VCY  +F
Sbjct: 256 MDIQDNKCTWLVCYAEKF 273


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 185 SFKQPTE*FSSSRFDSNILFGYFRENILIV 274
           SF +  E ++ S FDS  +FGY      I+
Sbjct: 63  SFTEKCEKYNISLFDSTFVFGYIVNCFFII 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,561
Number of Sequences: 5004
Number of extensions: 35481
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)