Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L20
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566...    27   8.2  
01_04_0008 + 15041682-15041909,15042035-15042319,15042406-150427...    27   8.2  

>03_05_0327 -
           23154014-23154942,23155169-23155316,23155606-23156622,
           23156753-23157217,23160258-23161247
          Length = 1182

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 264 IFSLKYPNKIFESKRLLLNYSVGCLNEVNSIQTQIC 157
           +FS  + +++FE+   +L   V C  E+  I+  IC
Sbjct: 674 VFSSGWSDEMFEALTNILQSKVSCFAEIYDIEPPIC 709


>01_04_0008 +
           15041682-15041909,15042035-15042319,15042406-15042723,
           15044087-15044128,15045111-15045391,15045808-15045883,
           15046196-15046296,15047971-15048088,15048872-15049186
          Length = 587

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 334 FTLRQVKGDVQMALCALLCCHN*NI 260
           FTL Q+K  VQ  L  L  CHN N+
Sbjct: 167 FTLPQIKCYVQQLLSGLEHCHNNNV 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,616,902
Number of Sequences: 37544
Number of extensions: 178849
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)