Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L20
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42070.1 68416.m04317 hypothetical protein                          27   6.9  
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    27   6.9  
At5g41080.2 68418.m04994 glycerophosphoryl diester phosphodieste...    27   9.1  
At5g41080.1 68418.m04993 glycerophosphoryl diester phosphodieste...    27   9.1  
At4g04402.1 68417.m00635 two-component phosphorelay mediator, pu...    27   9.1  

>At3g42070.1 68416.m04317 hypothetical protein
          Length = 230

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 377 IYYNII-QLIILVRAFYTASSKR*RSDGALCAFVL 276
           +Y+ ++ Q +  VR +Y    KR   +GAL  F+L
Sbjct: 27  LYHELVRQFMAFVRVYYVNDRKRNAQEGALIFFIL 61


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 13  PLHRLTTHCTFWCTF*SLVILLFYKLISITFYIFIENKFK 132
           PL RLT    FW T   LV++    ++  TF  F +  ++
Sbjct: 536 PLDRLTGFNAFWYTHHLLVVVYIMLIVHGTFLFFADKWYQ 575


>At5g41080.2 68418.m04994 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           SP|P37965 Glycerophosphoryl diester phosphodiesterase
           (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 358

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 112 FIENKFKGIINNARATDLSLN 174
           FI ++  GI+N +R TDLSL+
Sbjct: 83  FIYSEENGIVNESRVTDLSLS 103


>At5g41080.1 68418.m04993 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           SP|P37965 Glycerophosphoryl diester phosphodiesterase
           (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 374

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 112 FIENKFKGIINNARATDLSLN 174
           FI ++  GI+N +R TDLSL+
Sbjct: 99  FIYSEENGIVNESRVTDLSLS 119


>At4g04402.1 68417.m00635 two-component phosphorelay mediator,
           putative similar to ATHP1 [Arabidopsis thaliana]
           GI:4156241, ATHP2 [Arabidopsis thaliana] GI:4156243
          Length = 167

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 109 IFIENKFKGIINNARATDLSLNTIDF 186
           +F E+  K I N ARA D S  T+DF
Sbjct: 51  LFFEDCVKLISNMARALDKSTGTVDF 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,127,021
Number of Sequences: 28952
Number of extensions: 163271
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)