Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L19
(551 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 170 6e-43
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 170 7e-43
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 2e-42
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 168 2e-42
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 93 1e-19
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27) 79 3e-15
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 70 1e-12
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 70 1e-12
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 70 1e-12
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 69 3e-12
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 66 2e-11
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 55 4e-08
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 54 1e-07
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 50 1e-06
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44) 48 4e-06
SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 9e-06
SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 43 1e-04
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18) 34 0.089
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 29 1.9
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.8
SB_28049| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-18) 28 5.8
SB_30373| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 170 bits (414), Expect = 6e-43
Identities = 77/87 (88%), Positives = 79/87 (90%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEP 284
QCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYVPRAILVDLEP
Sbjct: 11 QCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEP 70
Query: 285 GTMDSVRSEPFGQIFLPDNVCFPDSPA 365
GTMDSVRS PFGQIF PDN F S A
Sbjct: 71 GTMDSVRSGPFGQIFRPDNFVFGQSGA 97
Score = 94.7 bits (225), Expect = 4e-20
Identities = 45/66 (68%), Positives = 46/66 (69%)
Frame = +2
Query: 353 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*FQXXXXXXXXXXXXXXXXXX 532
GQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQ FQ
Sbjct: 93 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLI 152
Query: 533 XKIREE 550
KIREE
Sbjct: 153 SKIREE 158
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 170 bits (413), Expect = 7e-43
Identities = 76/87 (87%), Positives = 79/87 (90%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEP 284
QCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYVPRA+LVDLEP
Sbjct: 224 QCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEP 283
Query: 285 GTMDSVRSEPFGQIFLPDNVCFPDSPA 365
GTMDSVRS PFGQIF PDN F S A
Sbjct: 284 GTMDSVRSGPFGQIFRPDNFVFGQSGA 310
Score = 94.7 bits (225), Expect = 4e-20
Identities = 45/66 (68%), Positives = 46/66 (69%)
Frame = +2
Query: 353 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*FQXXXXXXXXXXXXXXXXXX 532
GQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDCLQ FQ
Sbjct: 306 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLI 365
Query: 533 XKIREE 550
KIREE
Sbjct: 366 SKIREE 371
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 169 bits (410), Expect = 2e-42
Identities = 75/82 (91%), Positives = 77/82 (93%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEP 284
QCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYVPRAILVDLEP
Sbjct: 11 QCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILVDLEP 70
Query: 285 GTMDSVRSEPFGQIFLPDNVCF 350
GTMDSVRS PFGQIF PDN F
Sbjct: 71 GTMDSVRSGPFGQIFRPDNFVF 92
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 168 bits (409), Expect = 2e-42
Identities = 74/87 (85%), Positives = 79/87 (90%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEP 284
QCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYVPR++L+DLEP
Sbjct: 11 QCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRSVLIDLEP 70
Query: 285 GTMDSVRSEPFGQIFLPDNVCFPDSPA 365
GTMDSVRS PFGQIF PDN F S A
Sbjct: 71 GTMDSVRSGPFGQIFRPDNFVFGQSGA 97
Score = 92.7 bits (220), Expect = 2e-19
Identities = 43/66 (65%), Positives = 46/66 (69%)
Frame = +2
Query: 353 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*FQXXXXXXXXXXXXXXXXXX 532
GQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+ESCDC+Q FQ
Sbjct: 93 GQSGAGNNWAKGHYTEGAELMDSVLDVVRKEAESCDCIQGFQLTHSLGGGTGSGMGTLLI 152
Query: 533 XKIREE 550
KIREE
Sbjct: 153 SKIREE 158
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/66 (66%), Positives = 46/66 (69%)
Frame = +2
Query: 353 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*FQXXXXXXXXXXXXXXXXXX 532
GQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+ESCDC+Q FQ
Sbjct: 38 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCIQGFQLTHSLGGGTGSGMVTLLI 97
Query: 533 XKIREE 550
KIREE
Sbjct: 98 LKIREE 103
Score = 71.3 bits (167), Expect = 5e-13
Identities = 33/41 (80%), Positives = 34/41 (82%)
Frame = +3
Query: 243 GKYVPRAILVDLEPGTMDSVRSEPFGQIFLPDNVCFPDSPA 365
GKYVPRA+LVDLEPGTMDSVRS PFGQIF PDN F S A
Sbjct: 2 GKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA 42
>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
Length = 144
Score = 78.6 bits (185), Expect = 3e-15
Identities = 34/67 (50%), Positives = 43/67 (64%)
Frame = +2
Query: 350 SGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*FQXXXXXXXXXXXXXXXXX 529
+ QSGA NNWAKGHY+EGAEL+D++ DV+RKE+E+CDC+Q Q
Sbjct: 48 NSQSGAANNWAKGHYSEGAELIDNIFDVLRKEAENCDCMQGVQLIQALGGGTGSGLGTLI 107
Query: 530 XXKIREE 550
KIREE
Sbjct: 108 LSKIREE 114
Score = 60.5 bits (140), Expect = 9e-10
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +3
Query: 237 SGGKYVPRAILVDLEPGTMDSVRSEPFGQIFLPDN 341
+GG+YVPR+ILVDLEPGTMD+VR P G +F PDN
Sbjct: 11 TGGRYVPRSILVDLEPGTMDAVRGGPLGNMFRPDN 45
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G QIG WE+ EHGI P G D + + N +++E GK+VPRA+ VDL
Sbjct: 10 QAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL 69
Query: 279 EPGTMDSVRSEPFGQIFLPDNV 344
EP +D VR+ + Q+F P+ +
Sbjct: 70 EPTVVDEVRTGTYRQLFHPEQL 91
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G E++D VLD +RK ++ C LQ F
Sbjct: 89 EQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGF 134
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G QIG WE+ EHGI P G D + + N +++E GK+VPRA+ VDL
Sbjct: 11 QAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL 70
Query: 279 EPGTMDSVRSEPFGQIFLPDNV 344
EP +D VR+ + Q+F P+ +
Sbjct: 71 EPTVVDEVRTGTYRQLFHPEQL 92
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G QIG WE+ EHGI P G D + + N +++E GK+VPRA+ VDL
Sbjct: 444 QAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL 503
Query: 279 EPGTMDSVRSEPFGQIFLPDNV 344
EP +D VR+ + Q+F P+ +
Sbjct: 504 EPTVVDEVRTGTYRQLFHPEQL 525
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G E+VD VLD +RK ++ C LQ F
Sbjct: 523 EQLITGKEDAANNYARGHYTVGKEIVDLVLDRIRKLADQCTGLQGF 568
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G E+VD VLD +RK ++ C LQ F
Sbjct: 90 EQLVTGKEDAANNYARGHYTVGKEIVDLVLDRIRKLADQCTGLQGF 135
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G QIG WE+ EHGI P G D + + N +++E GK+VPRA+ VDL
Sbjct: 75 QAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL 134
Query: 279 EPGTMDSVRSEPFGQIFLPDNV 344
EP +D VR+ + Q+F P+ +
Sbjct: 135 EPTVVDEVRTGTYRQLFHPEQL 156
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G QIG WE+ EHGI P G D + + N +++E GK+VPRA+ VDL
Sbjct: 596 QAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL 655
Query: 279 EPGTMDSVRSEPFGQIFLPDNV 344
EP +D VR+ + Q+F P+ +
Sbjct: 656 EPTVVDEVRTGTYRQLFHPEQL 677
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G QIG WE+ EHGI P G D + + N +++E GK+VPRA+ VDL
Sbjct: 523 QAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL 582
Query: 279 EPGTMDSV 302
EP + +
Sbjct: 583 EPTVRECI 590
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G EL+D VLD +RK ++ C LQ F
Sbjct: 675 EQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGF 720
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G E+VD VLD +RK ++ C LQ F
Sbjct: 154 EQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGF 199
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G Q+G WE+ EHGI P G D + + N +++E GK+VPRA+ VDL
Sbjct: 429 QAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL 488
Query: 279 EPGTMDSVRSEPFGQIFLPDNV 344
EP +D +R+ + Q+F P+ +
Sbjct: 489 EPSVIDEIRTGTYRQLFHPEQL 510
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +3
Query: 120 IGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDLEPGTM 293
+G WE+ EHGI P G D + + N +++E GK+VPRA+ DLEP +
Sbjct: 1 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFCDLEPTVV 60
Query: 294 DSVRSEPFGQIFLPDNV 344
D VR+ + Q+F P+ +
Sbjct: 61 DEVRTGTYRQLFHPEQL 77
Score = 51.2 bits (117), Expect = 5e-07
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G + +D+VLD +RK ++ C LQ F
Sbjct: 508 EQLITGKEDAANNYARGHYTVGKDHIDNVLDRIRKLADQCSGLQGF 553
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G +L++ VLD +RK ++ C LQ F
Sbjct: 75 EQLITGKEDAANNYARGHYTVGKQLIEIVLDRLRKLADQCTGLQGF 120
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 68.5 bits (160), Expect = 3e-12
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G QIG WE+ EHGI P G D + + N ++ E GK+VPRA+ VDL
Sbjct: 382 QAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFAETGAGKHVPRAVFVDL 441
Query: 279 EPGTMDSVRSEPFGQIFLPDNV 344
EP +D VR+ + Q+F P+ +
Sbjct: 442 EPTVIDEVRTGTYRQLFHPEQL 463
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G Q+G WE+ EHGI P G D + + N +++E GK+VPRA+ DL
Sbjct: 815 QAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFADL 874
Query: 279 EPGTMDSVRSEPFGQIFLPDNV 344
EP +D VR+ + Q+F P+ +
Sbjct: 875 EPTVVDEVRTGTYRQLFHPEQL 896
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G E++D VLD +RK ++ C LQ F
Sbjct: 894 EQLITGKEDAANNYARGHYTVGKEMIDLVLDRIRKLADQCTGLQGF 939
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G E +D VLD +RK ++ C LQ F
Sbjct: 461 EQLITGKEDAANNYARGHYTVGKEQIDIVLDRLRKLADGCTGLQGF 506
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G Q+G WE+ EHGI P G D + + N +++E GK+VPRA+ VDL
Sbjct: 11 QAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL 70
Query: 279 EPGTMDSVRSEPFGQIFLPDNV 344
EP +D VR+ + Q+F P+ +
Sbjct: 71 EPTVVDEVRTGTYRQLFHPEQL 92
Score = 50.8 bits (116), Expect = 7e-07
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G E++D VLD RK ++ C LQ F
Sbjct: 90 EQLITGKEDAANNYARGHYTIGKEIIDLVLDRCRKLADQCTGLQGF 135
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G Q+G WE+ EHGI P G D + + N +++E GK+VPRA+ DL
Sbjct: 11 QAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGSGKHVPRAVFCDL 70
Query: 279 EPGTMDSVRSEPFGQIFLPDNV 344
EP +D VR+ + Q+F P+ +
Sbjct: 71 EPTVVDEVRTGTYRQLFHPEQL 92
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/46 (47%), Positives = 34/46 (73%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G E++D+VLD +RK ++ C LQ F
Sbjct: 90 EQLITGKEDAANNYARGHYTVGKEMIDTVLDRLRKLADGCTGLQGF 135
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/65 (47%), Positives = 38/65 (58%)
Frame = +2
Query: 356 QSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*FQXXXXXXXXXXXXXXXXXXX 535
Q+ A NNWAKG YTEGAEL+DS +D +RK +E+CD +Q FQ
Sbjct: 2 QNSAANNWAKGFYTEGAELMDSGMDCIRKLAENCDTVQGFQIAHSLGGGTGSGLGSLLLS 61
Query: 536 KIREE 550
KIREE
Sbjct: 62 KIREE 66
>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G QIG WE+ EHGI P G D + + N +++E GGK+VPRA+ VDL
Sbjct: 11 QAGVQIGNACWELYCLEHGIQPDGQMPSDKTIDGGDDSFNTFFSETGGGKHVPRAVFVDL 70
Query: 279 EPGTMDSVRSEPFGQIFLP 335
EP + ++ + F I LP
Sbjct: 71 EPSVVGRMK-DCFPNIPLP 88
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDL 278
Q G QIG WE+ EHGI P G D + N +++E GK+VPRA+ VDL
Sbjct: 11 QAGVQIGNACWELYCLEHGIQPDGQMPSDKTQGGGDDSFNTFFSETGAGKHVPRAVFVDL 70
Query: 279 EP 284
EP
Sbjct: 71 EP 72
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G + VD VLD +RK ++ C LQ F
Sbjct: 80 EQLITGKEDAANNYARGHYTIGKQQVDQVLDRLRKLADQCSGLQGF 125
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G EL+D VLD +RK ++ C LQ F
Sbjct: 27 EQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGF 72
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L +G+ A NN+A+GHYT G EL+D VLD +RK ++ C LQ F
Sbjct: 15 EQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGF 60
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 52.0 bits (119), Expect = 3e-07
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
+++ SG+ A NN+A+GHYT G E+V+ V+D +RK ++ C LQ F
Sbjct: 1001 EQMISGKEDAANNYARGHYTIGKEMVEVVMDKIRKMTDQCSGLQGF 1046
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/39 (48%), Positives = 29/39 (74%)
Frame = +3
Query: 228 NEASGGKYVPRAILVDLEPGTMDSVRSEPFGQIFLPDNV 344
+EA+ GKYVPRA+LVDLEP +D VR+ + ++ P+ +
Sbjct: 965 SEAAAGKYVPRAVLVDLEPTVIDEVRTGMYRYLYHPEQM 1003
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L SG+ A NN+A+GHYT G E +D LD +RK ++ C LQ F
Sbjct: 55 EQLLSGKEDAANNYARGHYTVGKEHIDLALDRIRKLADQCTGLQGF 100
Score = 48.4 bits (110), Expect = 4e-06
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 207 ERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSEPFGQIFLPDNV 344
+ N ++ E GK+VPRA+ VDLEP +D +R+ + Q+F P+ +
Sbjct: 12 DSFNTFFAETGAGKHVPRAVFVDLEPTVIDEIRTGTYRQLFHPEQL 57
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
++L SG+ A NN+A+GHYT G E +D LD +RK ++ C LQ F
Sbjct: 15 EQLLSGKEDAANNYARGHYTVGKEHIDLALDRIRKLADQCTGLQGF 60
>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
Length = 474
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +2
Query: 347 FSGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQ*F 475
FS + G+GNNWA G G + +D VLD+V++E E CD L F
Sbjct: 99 FSQKRGSGNNWAHGFSEHGPKSIDKVLDLVQREVEKCDRLDGF 141
>SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 338 QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 442
++L +G+ A NN+A+GHYT G EL+D VLD +RK
Sbjct: 15 EQLITGKEDAANNYARGHYTVGKELIDLVLDRIRK 49
>SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +3
Query: 132 FWEIISDEHGIDPTGAYHG-DSDLQLERINVYYNE 233
FWE+I++EHGIDP G S +Q +R+NVY++E
Sbjct: 1 FWEVIAEEHGIDPDGQCTAVQSKIQTDRLNVYFDE 35
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +2
Query: 308 GTFRTDIPA*QRLFSGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 442
GT+R D+ +L +G+ A NN+A+GHYT G E +D L+ +RK
Sbjct: 6 GTYR-DLFHPDQLITGKEDAANNYARGHYTVGKEHIDLTLEKIRK 49
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +3
Query: 105 QCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER----INVYYNEASGGKY 251
Q G QIG WE+ EHGI P G H SD +R + +++E + GK+
Sbjct: 206 QAGVQIGNACWELYCLEHGIQPDG--HMPSDQSADRCDDSFSTFFSETASGKH 256
>SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)
Length = 553
Score = 33.9 bits (74), Expect = 0.089
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 344 LFSGQSGAGNNWAKGHYTE-----GAELVDSVLDVVRKESESCD 460
+ +G+ G GNN+A G++ G L+ +D +RKE E CD
Sbjct: 69 IIAGRRGRGNNFALGYHGNSIDEGGTSLLHMTMDAMRKEVERCD 112
>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
Length = 808
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 261 AILVDLEPGTMDSVRSEPFGQIFLPDNVCFPDSPAPVT 374
A L EP T + SE + LP + C PDSP P T
Sbjct: 46 ATLTQAEPCTPEPTSSE---NVILPASPCEPDSPKPYT 80
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 144 ISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEP 284
+ D G GD L L + +Y E G + V R + LEP
Sbjct: 792 VDDVRGCFQEALKEGDGQLTLNSLIEHYKELEGSEKVARELFAMLEP 838
>SB_28049| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-18)
Length = 346
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 175 PVGSMPCSSEMISQNLAPIWLPHCRLECARSSFYFLF*FNKIVN 44
P G +P + ++ L W+ C L S+FY +F + K+VN
Sbjct: 139 PTGVVPMTKQVRCILLVAAWMVPCGL----SAFYLVFPYTKVVN 178
>SB_30373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 282 PGTMDSVRSEPFGQIFLPDNVCFPDS 359
PG +D R P +P+NVCFP S
Sbjct: 237 PGYLDHGRQLPEYSRLIPNNVCFPFS 262
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,605,822
Number of Sequences: 59808
Number of extensions: 296276
Number of successful extensions: 898
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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