Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L18
         (407 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.2  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   3.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    20   8.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 320 SQNCTREKAKSV*VSQASGTSAGKYS 397
           S+N T EK+  + ++++   S G YS
Sbjct: 34  SENLTEEKSSLIDLTESEEKSGGSYS 59


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 81  PGLSCHIQLSSDIFLAVGSLLLVVPSC 1
           P L+C + + + I +A   ++ VVP C
Sbjct: 193 PLLACGVMVVTHITMAHFKIIQVVPYC 219


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 305  GVMLVSQNCTREKAK-SV*VSQASGTSAGKYSCY 403
            GV   + +  R++   S+ +   S  +AG+YSC+
Sbjct: 1344 GVQFTTSDKIRQQPDGSLFIRDVSRNNAGEYSCH 1377


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 355 DRFGLFARAVLTDKHY 308
           +++G FA A   DK+Y
Sbjct: 41  EKYGFFADAEQCDKYY 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,799
Number of Sequences: 336
Number of extensions: 1974
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)