Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L18
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    29   0.37 
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   4.5  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   6.0  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    24   7.9  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    24   7.9  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 28.7 bits (61), Expect = 0.37
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 105 PAFRPLVPLWRDSTRGSHATDQLNDVENTYDYHLLMVIVEAL 230
           P+  P +  W     GS    +L  +EN YD  L   ++ AL
Sbjct: 139 PSKNPYIEKWEGLRTGSTLGKKLFQIENVYDSSLASSVINAL 180


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 16  KQETPNSEKDIRAKLDMATKSRFERNWHNT 105
           ++E  NS   IRA+ D AT S    ++HNT
Sbjct: 384 RKEYSNSPFSIRARKDAATTSSSFESYHNT 413


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +3

Query: 129 LWRDSTRGSHATDQLNDVENTYDYHLLMVIVEAL 230
           ++ ++ + SH  D LN V N Y  ++++V ++ +
Sbjct: 288 IYVEARKQSHVLDALNGVLNVYTNNMILVPIKEM 321


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 32   TARKISELSWIWQLSPGSRGTGTIPCISSIGAVME 136
            T   I  L     L+PGSR  G +  ++  GA+++
Sbjct: 1037 TLSAIGPLQGFENLTPGSRLVGKVTNVNEAGAILQ 1071


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 93  LAQYPAFRPLVPLWRDSTRGSHATDQLNDVENTYDYHLLMVIV 221
           L Q P F PL+ +    +   HAT  L    NT D H  ++IV
Sbjct: 569 LVQNPDFFPLL-IRVVKSLNFHATSLLRSSRNTLDLHKDVLIV 610


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 78  QVREELAQYPAFRPLVP-LWRDSTRGSHATDQLNDVENTYDYHLLMVIVEALWTL 239
           ++RE   Q     P VP +W D      A +  + VE  +   L+ V+   LWTL
Sbjct: 89  ELRETYEQMLRPFPYVPRVWVDYISSELAFNDFHAVELLFSRCLVKVLSVDLWTL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,104
Number of Sequences: 5004
Number of extensions: 34866
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)