Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L18
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1345 + 32792879-32794207                                         28   3.3  
02_04_0596 + 24195863-24196179,24196257-24196359                       27   4.3  
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    27   5.7  
06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215...    27   5.7  
11_05_0036 - 18514964-18515042,18515268-18515385,18515820-185158...    27   7.6  
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548...    27   7.6  
01_05_0526 + 22944889-22944999,22945207-22945317,22945397-229455...    27   7.6  

>04_04_1345 + 32792879-32794207
          Length = 442

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 13  DKQETPNSEKDIRAKLDMATKSRFERNWHNTLHFVHW 123
           D   TP S  D  A L+  T S +  +W   L F HW
Sbjct: 22  DVAATPPSPLDATAVLE--TLSLYANDWRRALEFFHW 56


>02_04_0596 + 24195863-24196179,24196257-24196359
          Length = 139

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 356 RPIWPFRACSFD*QALR-PCSCQCC 285
           R  WP  A   D  A+R PC+C CC
Sbjct: 50  RTNWPLVAGMTDVMAVREPCACTCC 74


>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
            14479958-14480024,14480632-14480831,14480915-14481068,
            14481585-14481669,14481766-14481857,14482575-14482766,
            14482867-14482992,14483072-14483125,14483494-14483550,
            14484509-14484606,14484703-14485038,14485116-14485203,
            14486891-14487016,14487082-14487138,14488054-14488133,
            14488228-14488270,14488948-14489034,14489331-14489420,
            14489996-14490054,14490141-14490231,14490330-14490495,
            14490662-14490755,14491787-14492909
          Length = 1537

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 38   RKISELSWIWQLSPGSRGTGTIPCISSIGAVMERLHKRLACDR 166
            ++I  L       PG  G  T+ CI ++  + +R+   +  DR
Sbjct: 1037 KRIDRLLQFDNFMPGYNGVLTVSCIRTLARIAQRVSSSICLDR 1079


>06_01_0296 -
           2156895-2157160,2157435-2157527,2157932-2158031,
           2158634-2158738,2158832-2158972,2159056-2159568
          Length = 405

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 37  EKDIRAKLDMATKSRFERNWHNTLHFVHWCRYGETPQEA-RMRQISLTTSK 186
           +KD    L +A  +R    WH+T  F   C     P EA R +Q S  + K
Sbjct: 159 DKDAMGDLAIAGHARALLEWHSTAKFCGACGSRAVPAEAGRRKQCSNESCK 209


>11_05_0036 -
           18514964-18515042,18515268-18515385,18515820-18515878,
           18516006-18516205
          Length = 151

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -2

Query: 376 TAGLRHSDRFGLFARAVLTDKHYAHVHANVAPFERLANRY 257
           TA  R + RFG+ ++     +   +++++  PF++L ++Y
Sbjct: 44  TASARITMRFGVASKQAYICRDCGYIYSDRTPFDKLPDKY 83


>02_01_0735 +
           5484398-5484400,5484670-5484773,5485012-5485138,
           5485212-5485306,5485597-5485720,5486523-5486603,
           5487177-5487275,5487416-5487583,5487688-5487775,
           5487860-5487930,5488000-5488068,5488368-5488499,
           5488740-5488946
          Length = 455

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 44  ISELSWIWQLSPGSRGTGTIPCISSIGA 127
           ++  S+I+++  G RG GT  C SSI A
Sbjct: 264 VTNESFIFEIISGLRGAGTNSCSSSIDA 291


>01_05_0526 +
           22944889-22944999,22945207-22945317,22945397-22945592,
           22946454-22946512,22946761-22946958,22947233-22947341,
           22947431-22947696
          Length = 349

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 260 PVSESLKWGNIGMNMGVMLVSQNC-TREKAKSV 355
           P+++S   G++G+N  V  + QNC T E+A+S+
Sbjct: 269 PMTQSQFLGSLGINFRVEALLQNCATDEQAESL 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,934,163
Number of Sequences: 37544
Number of extensions: 243020
Number of successful extensions: 687
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)