Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L18
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)                       29   1.9  
SB_35042| Best HMM Match : S-antigen (HMM E-Value=3)                   27   5.9  

>SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)
          Length = 959

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 59  WIWQLSPGSRGTGTIPCISSIGAVMERLH 145
           WI +++ G RG  T  C+   G   ERLH
Sbjct: 378 WIQEIAWGKRGMDTRDCMGQTGNGYERLH 406



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 8   GTTSRRLPTARKISELSWIWQLSPGSRGTGTIPCISSIGAVMERLH 145
           G   +RLP A       WI +++ G RG  T  C+   G   +RLH
Sbjct: 297 GDGYQRLPGANG----EWIQEIAWGKRGMDTRDCMGQTGNGYKRLH 338



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 59  WIWQLSPGSRGTGTIPCISSIGAVMERLH 145
           WI +++ G RG  T  C+   G   +RLH
Sbjct: 197 WIQEIAWGKRGMDTRDCMGQTGNGYKRLH 225



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 59  WIWQLSPGSRGTGTIPCISSIGAVMERLH 145
           WI +++ G RG  T  C+   G   +RLH
Sbjct: 265 WIQEIAWGKRGMDTRDCMGQTGNGYKRLH 293



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 59  WIWQLSPGSRGTGTIPCISSIGAVMERLH 145
           WI +++ G RG  T  C+   G   +RLH
Sbjct: 412 WIQEIAWGKRGMDTRDCMGQTGNGYKRLH 440


>SB_35042| Best HMM Match : S-antigen (HMM E-Value=3)
          Length = 165

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 1   ARGDDKQETPNSEKDIRAKLDMATKSRFE 87
           A  +D  + P+S+ D++ KLD+   S+ E
Sbjct: 50  AENNDLSKAPSSDSDVKDKLDIVISSQVE 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,839,167
Number of Sequences: 59808
Number of extensions: 277880
Number of successful extensions: 598
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)