Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L18
         (407 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC043366-1|AAH43366.1|  694|Homo sapiens growth arrest-specific ...    29   4.6  
BC052957-1|AAH52957.1|  310|Homo sapiens family with sequence si...    29   8.0  
AK024382-1|BAB14902.1|  196|Homo sapiens protein ( Homo sapiens ...    29   8.0  
AJ417849-1|CAD10629.1|  310|Homo sapiens NSE2 protein protein.         29   8.0  

>BC043366-1|AAH43366.1|  694|Homo sapiens growth arrest-specific 2
           like 3 protein.
          Length = 694

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  KDIRAKLDMATKSRFERNWHNTLHFVHWCR 129
           + +  K D A+ S F R+  NT +F+HWCR
Sbjct: 106 RKVPCKKDAASGSFFARD--NTANFLHWCR 133


>BC052957-1|AAH52957.1|  310|Homo sapiens family with sequence
           similarity 84, member B protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 85  ERNWHNTLHFVHWCRYGE 138
           E +W N+  F  WCRYG+
Sbjct: 195 ELSWRNSESFAAWCRYGK 212


>AK024382-1|BAB14902.1|  196|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14320 fis, clone PLACE3000455. ).
          Length = 196

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 159 HASLLWSLSITAPMDEMQGIVPVPLEPGLSCHIQLSSDIFLAVGS 25
           H S+ ++ S T P  +MQG+  + L P  S H+ LSS +   +GS
Sbjct: 77  HNSVSFAGSYTCPPSKMQGV--LGLSPQTSSHLSLSSLLSDLLGS 119


>AJ417849-1|CAD10629.1|  310|Homo sapiens NSE2 protein protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 85  ERNWHNTLHFVHWCRYGE 138
           E +W N+  F  WCRYG+
Sbjct: 195 ELSWRNSESFAAWCRYGK 212


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,332,544
Number of Sequences: 237096
Number of extensions: 1371543
Number of successful extensions: 2718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2718
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)