Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L18
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68108-4|CAA92136.1|  246|Caenorhabditis elegans Hypothetical pr...    30   0.74 
Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AL132949-18|CAB70109.2|  725|Caenorhabditis elegans Hypothetical...    27   6.9  
Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    26   9.1  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    26   9.1  

>Z68108-4|CAA92136.1|  246|Caenorhabditis elegans Hypothetical
           protein T05A10.5 protein.
          Length = 246

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 7   GDDKQETPNSEKDIRAKLDMATKSRFERNWHNTLHFVHWCRYGETPQEARMRQISLTTSK 186
           G+     P + + I+ + D   + RF +NW N   F H   Y E P + +   +S  ++ 
Sbjct: 77  GETNTSQPKASQMIKMEYDCMLE-RFAQNWANNCVFAHSAHY-ERPNQGQNLYMSSFSNP 134

Query: 187 TPMIII 204
            P  +I
Sbjct: 135 DPRSLI 140


>Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical
           protein ZC506.4b protein.
          Length = 954

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 403 VARVFPSGRTAGLRHSDRFGLFARAVLTDKHYAHVHANVA 284
           +A+V P+   A L   +RF  FAR V +D + A     +A
Sbjct: 172 IAQVSPASTNADLSDKNRFEYFARTVPSDDYQAMAMVEIA 211


>Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical
           protein ZC506.4a protein.
          Length = 999

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 403 VARVFPSGRTAGLRHSDRFGLFARAVLTDKHYAHVHANVA 284
           +A+V P+   A L   +RF  FAR V +D + A     +A
Sbjct: 217 IAQVSPASTNADLSDKNRFEYFARTVPSDDYQAMAMVEIA 256


>AL132949-18|CAB70109.2|  725|Caenorhabditis elegans Hypothetical
           protein Y53F4B.20 protein.
          Length = 725

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 217 SLRRFGPLLLATINTG*RVAQMGQHWHEHG 306
           S R    LL +T++    V+Q+  +WHEHG
Sbjct: 451 SSRTLYGLLNSTVDEDIYVSQLLHYWHEHG 480


>Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical
           protein B0391.12 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 260 VFIVASSKGPKRLNDYHQKMIIIGVFDVV 174
           + I+   K PK+L +Y   MI I VF+++
Sbjct: 22  LIILIWKKSPKKLGNYKILMIYIAVFEIL 50


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 159  HASLLWSLSITAPMDEMQGIVPVPLEP 79
            H+ L+W+  +   ++   G +P+PL P
Sbjct: 2971 HSHLIWAKKVMNDLNTKGGFMPIPLVP 2997


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 159  HASLLWSLSITAPMDEMQGIVPVPLEP 79
            H+ L+W+  +   ++   G +P+PL P
Sbjct: 2976 HSHLIWAKKVMNDLNTKGGFMPIPLVP 3002


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,915,635
Number of Sequences: 27780
Number of extensions: 199489
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)