Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L18
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.44 
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    24   0.58 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   7.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 305  GVMLVSQNCTREKAK-SV*VSQASGTSAGKYSCY 403
            G +L S +  R+  + S+ + +   T AG+YSCY
Sbjct: 1314 GAVLQSSDRLRQLPEGSLFIKEVDRTDAGEYSCY 1347


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 102 IVPVPLEPGLSCHIQLSSDIFLAVGSL 22
           IV +  E GL  H++LSSD ++  G L
Sbjct: 59  IVGLFYEFGLITHVKLSSDWYMGQGKL 85


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 95  GTIPCISSIGAVMERL 142
           G + CI  +GAVM  L
Sbjct: 1   GVLRCIGDMGAVMTSL 16


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 141 STRGSHATDQLNDVENTYD 197
           S + +H T++ ND   TYD
Sbjct: 311 SDKENHKTEEPNDEVATYD 329


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 150 GSHATDQLNDVENTYD 197
           GSH    LND+ +TY+
Sbjct: 21  GSHEKRLLNDLLDTYN 36


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 87  EELAQYPAFRPLVPL 131
           E L ++P+ RP  PL
Sbjct: 872 EVLDEFPSVRPFAPL 886


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,894
Number of Sequences: 438
Number of extensions: 2525
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)