Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L16
         (400 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   2.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   3.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   4.5  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    20   7.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   7.8  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 190 HHGVYKRTSPSGN*HFPLPNGWSPQAS*SH 101
           HH      + +    FPL  G SP AS  H
Sbjct: 24  HHHEQSAAAAAAYRSFPLSLGMSPYASSQH 53


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 124 TTHLGAENVNFQMETYVYKRRGDGT 198
           T  L   N N+   TY+ K  G G+
Sbjct: 272 TFTLSNSNTNYNPGTYINKEAGGGS 296


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 390 VSKCTRSETSSNWC 349
           VS C +  +SS WC
Sbjct: 135 VSSCHQGFSSSTWC 148


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 273 WILHGDNSTSSEYKLFPCT 217
           W+L G   T +  K F CT
Sbjct: 21  WLLQGHIRTHTGEKPFSCT 39


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 118 AATTHLGAENVNFQMETYVYKRRGDGTH 201
           AAT HLG+       E++ +      TH
Sbjct: 148 AATHHLGSVYSRHPYESWPFNTMSGATH 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,976
Number of Sequences: 336
Number of extensions: 1753
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)