Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L16
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 133 6e-32
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 130 4e-31
04_04_0157 + 23165638-23166633 28 2.4
10_08_0127 - 15010125-15011068,15011328-15011835 27 7.2
10_08_0116 + 14935582-14936089,14936850-14937188,14937914-149379... 27 7.2
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 26 9.5
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813... 26 9.5
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409... 26 9.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 133 bits (321), Expect = 6e-32
Identities = 63/115 (54%), Positives = 77/115 (66%)
Frame = +1
Query: 55 ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 234
A G L+ +E+DV MLAA HLG +N +FQME YVYKRR DG ++INL +TWEK
Sbjct: 3 AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62
Query: 235 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQ 399
E+P D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q
Sbjct: 63 QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQ 117
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 130 bits (314), Expect = 4e-31
Identities = 64/113 (56%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
Frame = +1
Query: 67 GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 240
GG ALS E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEK
Sbjct: 5 GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64
Query: 241 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQ 399
E+P D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q
Sbjct: 65 AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQ 117
>04_04_0157 + 23165638-23166633
Length = 331
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 230 FSHVRRRLITCVPSPRRL 177
FSH+RRRL+ +P+P L
Sbjct: 5 FSHLRRRLLAAIPNPNLL 22
>10_08_0127 - 15010125-15011068,15011328-15011835
Length = 483
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 3 TRRLPVALYAFSRNSYKRNDVGRIRLACAQRGRCD*DACGDHPFGSGK 146
TRR V L A +R + +VG++ + A RGR A GD G+GK
Sbjct: 92 TRRAGVGLVA-ARRDERSCEVGKVEVEVATRGRD--GAGGDGGGGAGK 136
>10_08_0116 +
14935582-14936089,14936850-14937188,14937914-14937960,
14938175-14938264
Length = 327
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 3 TRRLPVALYAFSRNSYKRNDVGRIRLACAQRGRCD*DACGDHPFGSGK 146
TRR V L A +R + +VG++ + A RGR A GD G+GK
Sbjct: 92 TRRAGVGLVA-ARRDERSCEVGKVEVEVATRGRD--GAGGDGGGGAGK 136
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 22 HYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETY 171
HY + VT +G + L+ L +ED+ K L+A H E + MET+
Sbjct: 252 HYIKSQVTAA----TGAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296
>05_04_0083 +
17780665-17780764,17781070-17781124,17781193-17781313,
17781361-17781429,17782047-17782274,17782477-17782666,
17783303-17783694,17784380-17784427,17784816-17785400
Length = 595
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 368 KRPAIGVAPVWAANLSTARWPNAR 297
++ A+ A W N +WPNAR
Sbjct: 564 RQRAVAEAKTWGENSRERKWPNAR 587
>02_02_0625 -
12339623-12339707,12339938-12340062,12340844-12340996,
12342037-12342102,12343374-12343443,12343523-12343593,
12343664-12343795,12344042-12344130,12344189-12344270,
12344743-12344811,12345641-12345730,12345856-12345918,
12346158-12346217
Length = 384
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 162 HLEINIFRSQMGGRRKHLSHIFLAER 85
HL ++ ++GG +HL H+F + R
Sbjct: 47 HLRSDVGCGEIGGNNRHLDHLFDSSR 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,270,618
Number of Sequences: 37544
Number of extensions: 216946
Number of successful extensions: 446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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