Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L16
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 125 9e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 123 5e-29
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 123 5e-29
At1g80540.1 68414.m09441 expressed protein ; expression supporte... 32 0.16
At4g03940.1 68417.m00557 expressed protein 27 4.6
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr... 26 8.0
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr... 26 8.0
At1g32090.1 68414.m03949 early-responsive to dehydration protein... 26 8.0
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 125 bits (302), Expect = 9e-30
Identities = 58/106 (54%), Positives = 71/106 (66%)
Frame = +1
Query: 82 LALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXX 261
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEK
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 262 XEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQ 399
E+P D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQ 117
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 123 bits (296), Expect = 5e-29
Identities = 55/102 (53%), Positives = 70/102 (68%)
Frame = +1
Query: 94 EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 273
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+K E+P
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 274 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQ 399
D+ V S+R +GQRAVLKFA +TG IAGR TPG FTNQ+Q
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQ 118
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 123 bits (296), Expect = 5e-29
Identities = 55/102 (53%), Positives = 70/102 (68%)
Frame = +1
Query: 94 EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 273
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+K E+P
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 274 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQ 399
D+ V S+R +GQRAVLKFA +TG IAGR TPG FTNQ+Q
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQ 118
>At1g80540.1 68414.m09441 expressed protein ; expression supported
by MPSS
Length = 481
Score = 31.9 bits (69), Expect = 0.16
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 282 HISWILHGDNSTSSEYKLFPCTPKINYVRT 193
H + + G N T+S Y PC P +NY+RT
Sbjct: 79 HFNIYVDGWNVTNSHYIAPPCNPSLNYLRT 108
>At4g03940.1 68417.m00557 expressed protein
Length = 310
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 67 GGLDLLALSEEDVTKM--LAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTW 225
G L LL S+E K + T +G ++FQ+ Y+R G G + + RR+W
Sbjct: 134 GVLALLQESQEKEAKTFKMYEATIVGTNYISFQINELNYRREGIGRN-LPRRRSW 187
>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 352
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -2
Query: 174 NVRLHLEINIFRSQMGGRRKHLSHIFLAERKQV*SSRH-RCVCKSYD*TRIMPLGGASC 1
+V LHL N+ R SH RK++ SS H CVC ++D I + +C
Sbjct: 26 HVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVC-AFDPENIWQVYSPNC 83
>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 345
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -2
Query: 174 NVRLHLEINIFRSQMGGRRKHLSHIFLAERKQV*SSRH-RCVCKSYD*TRIMPLGGASC 1
+V LHL N+ R SH RK++ SS H CVC ++D I + +C
Sbjct: 19 HVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVC-AFDPENIWQVYSPNC 76
>At1g32090.1 68414.m03949 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 806
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 286 QTHQLDPPRRQQHEQRVQAFPMYAED*LRAYRHHGVYKRTSPSGN 152
+THQ + P + + Q+ E ++ HH VY TSPS +
Sbjct: 734 ETHQEETPEVRVDKHETQSSSPVTELGTSSHHHH-VYNSTSPSSH 777
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,433,288
Number of Sequences: 28952
Number of extensions: 156141
Number of successful extensions: 284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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