Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L15
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   2e-14
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              74   8e-14
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              68   4e-12
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   8e-09
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              46   1e-05
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        36   0.027
SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)          28   5.4  
SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         27   9.5  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
 Frame = +2

Query: 74  LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 253
           +CY+ + +  R    + LP D++P L  CTH++Y  A I   T K+ +   N D      
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----R 453

Query: 254 NYRAITNLKRQFPQLRVFLTVGGDDDTEDP-QKYNLLLESPQARTAFTNSALLLAEQYGF 430
            Y+ I +LK + P L+  L VGG +    P   ++ ++ S   RT F +S L L+++Y F
Sbjct: 454 LYKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDF 513

Query: 431 DGIDLSWQ 454
           DG DL W+
Sbjct: 514 DGFDLDWE 521


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 40/126 (31%), Positives = 63/126 (50%)
 Frame = +2

Query: 77  CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHAN 256
           CYY + S  R       P D++P L  CTH+L+  A +   T+K+    EN      H  
Sbjct: 25  CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77

Query: 257 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 436
           Y+ I  LK+  P+L+  + VGG    E    ++ ++ + + R  F  SA+     +GFDG
Sbjct: 78  YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDG 137

Query: 437 IDLSWQ 454
           +DL W+
Sbjct: 138 LDLDWE 143



 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 38/127 (29%), Positives = 63/127 (49%)
 Frame = +2

Query: 74  LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 253
           +CYY + S  R       P D++P L  CTH+++  + +   T+ M    +N D D    
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL--- 462

Query: 254 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 433
            Y+ I  LK+  P+L+  + VGG    E    ++ ++ + + R  F  SA+      GFD
Sbjct: 463 -YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFD 521

Query: 434 GIDLSWQ 454
           G+DL W+
Sbjct: 522 GLDLDWE 528


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
 Frame = +2

Query: 74  LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAH 250
           +CY+ + S  R+ +A+  P D+ PA   CTHL+Y  A I Q +   M   N+    D+ +
Sbjct: 22  VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75

Query: 251 ANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGF 430
             + A   LK++ P+L+  L VGG +       ++ ++++   R  F +S + +   +GF
Sbjct: 76  PRFNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGF 132

Query: 431 DGIDLSWQ 454
           DG+DL W+
Sbjct: 133 DGLDLDWE 140


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 36/127 (28%), Positives = 63/127 (49%)
 Frame = +2

Query: 74  LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 253
           +CYY + +  R   A+  P +++P+L  CTH++Y  A + AD  K+     N       A
Sbjct: 25  VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAA 76

Query: 254 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 433
            Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + FD
Sbjct: 77  MYKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFD 133

Query: 434 GIDLSWQ 454
           G+DL W+
Sbjct: 134 GLDLDWE 140


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = +2

Query: 257 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 436
           Y+   +LK + P L+  L VGG +       ++ ++ +  +R  F +S++ +  Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246

Query: 437 IDLSWQ 454
            DL W+
Sbjct: 247 FDLDWE 252


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +2

Query: 257 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 436
           Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + FDG
Sbjct: 2   YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58

Query: 437 IDLSWQ 454
           +DL W+
Sbjct: 59  LDLDWE 64


>SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)
          Length = 172

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 426 PYCSARRRAELVKAVRACGDSNKRLYFCGSSVSSSPPTVKN 304
           P+  AR    +VK+V      +  +Y C S +SSSPP  +N
Sbjct: 120 PHVFARYIRIIVKSVFRSASIHVEIYGCVSRLSSSPPPREN 160


>SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 54  LVAKAKSSATMTARAISENLKHVCCLRTWSLLF 152
           LVA+ K++   TAR + +  +H+   + W++++
Sbjct: 65  LVARCKNALIQTARTVVKRHRHMIAQQRWTVVY 97


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 219 SETILYVSAWMPADLYSRWVQNERAGSKSVGSI 121
           + T++  +AW   D Y  W+Q +  G+  V S+
Sbjct: 398 ASTVIIDTAWCAGDSYDCWLQVDLGGTHCVTSV 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,978,936
Number of Sequences: 59808
Number of extensions: 289014
Number of successful extensions: 935
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)