Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L15
(525 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 53 1e-07
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 47 7e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 44 8e-05
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 43 1e-04
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 42 2e-04
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 35 0.039
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 35 0.039
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 31 0.47
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 30 1.1
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 29 1.4
At1g23270.1 68414.m02911 hypothetical protein 29 2.5
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 28 3.3
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 3.3
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 3.3
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 28 3.3
At4g37110.1 68417.m05256 expressed protein 28 4.4
At4g15075.1 68417.m02316 hypothetical protein 28 4.4
At1g13540.1 68414.m01587 expressed protein 28 4.4
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 27 5.8
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 27 5.8
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 23 6.3
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 27 7.7
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 52.8 bits (121), Expect = 1e-07
Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Frame = +2
Query: 131 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 307
TD++ +L THL A ++A++Y++ N A + A T ++++ P ++
Sbjct: 21 TDIDSSLF--THLFCTFADLEAESYEITIATWN------QAPFHAFTETVQQRNPHVKTL 72
Query: 308 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 454
L++GG + +D + + +P +R +F S + +A YGF G+DL W+
Sbjct: 73 LSIGGGNADKDA--FASMASNPDSRASFIQSTITVARSYGFHGLDLDWE 119
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 47.2 bits (107), Expect = 7e-06
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Frame = +2
Query: 131 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 307
TD++ +L THL A + + T ++ + N + T ++R+ P ++
Sbjct: 42 TDIDSSLF--THLFCAFADLNSQTNQVTVSSAN------QPKFSTFTQTVQRRNPSVKTL 93
Query: 308 LTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 454
L++GG D Y + +P +R +F +S++ +A YGF G+DL W+
Sbjct: 94 LSIGGG--IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWE 140
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 43.6 bits (98), Expect = 8e-05
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +2
Query: 152 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVFLTVGGDD 328
S THL A I TY+++ + N + T ++R+ P ++ L++GGD
Sbjct: 45 SLFTHLFCAFADINTLTYQVIVSSRN------KPKFSTFTQTVRRRNPTVKTLLSIGGDF 98
Query: 329 DTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 454
+ + +P +R F +S++ LA GF G+DL+W+
Sbjct: 99 TYNFA--FASMASNPTSRKLFISSSIKLARSCGFHGLDLNWK 138
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/98 (27%), Positives = 50/98 (51%)
Frame = +2
Query: 161 THLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTED 340
THL A + T +V + ++ +N+ I +K++ P ++ L++GG + D
Sbjct: 39 THLFCAFADLDPQTNSVVVSGAH---EQEFSNFTKI--VKKKNPHVQTLLSIGGRN--AD 91
Query: 341 PQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 454
+ + +P +R +F SA+ A Y FDG+DL W+
Sbjct: 92 KSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWK 129
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 42.3 bits (95), Expect = 2e-04
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Frame = +2
Query: 50 SPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNEN 229
SPS++ K ++ E+Q + + P+ F THL A + A+++K+
Sbjct: 9 SPSAEVKASYWFPDG----ETQDPITSAETIPSALF-THLFCAFADLDANSHKVF----- 58
Query: 230 LDIDRAHAN-YRAITN-LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSA 403
+ +AH + T +K + PQ++ L++GG + + + + Q+R F +S
Sbjct: 59 --VSQAHEFIFSTFTETVKIRNPQVKTLLSIGGKNANNSA--FASMASNHQSRKTFIDSW 114
Query: 404 LLLAEQYGFDGIDLSWQ 454
+ +A GF G+DL+W+
Sbjct: 115 IFIARSNGFHGLDLAWE 131
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 34.7 bits (76), Expect = 0.039
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 359 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 454
+ S R +F S + +A YGFDG+DL W+
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWE 32
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 34.7 bits (76), Expect = 0.039
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Frame = +2
Query: 86 DSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRA 265
D KS E ++ P+ + F THL A + + T+++ N + +
Sbjct: 22 DGKSQSPECLSQGTPSSFIDSTLF-THLFCAFADVDSSTHEVTISAAN------SYQFSS 74
Query: 266 ITN-LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGID 442
T +K + ++ L++GG D D + + + R AF +S++ +A + F G+D
Sbjct: 75 FTETVKEKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLD 132
Query: 443 LSWQ 454
L+W+
Sbjct: 133 LAWE 136
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +2
Query: 275 LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 454
+K + ++ L++GG D D + + + R AF +S++ +A + F G+DL+W+
Sbjct: 71 VKDKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWE 128
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +2
Query: 359 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 454
++ + +R +F +S++ +A GF G+DL+W+
Sbjct: 79 IVSNRTSRESFISSSISIARSLGFYGLDLAWE 110
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 48 HHLVAKAKSSATMTARAISEN-LKHVCCLRTWSLLFRSAPICCTNLPASKLT 200
H V K +AR + N + H C+ W + S P+C LPA LT
Sbjct: 200 HCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLT 251
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 153 RSAPICCTNLPASKLTHIKWFHSM 224
RS PIC T P+S +H KW H +
Sbjct: 13 RSCPICATPFPSSSSSH-KWTHQV 35
>At1g23270.1 68414.m02911 hypothetical protein
Length = 180
Score = 28.7 bits (61), Expect = 2.5
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = -1
Query: 459 GNCQDRSIPSKPYCSARRRAEL-VKAVRACGDSNKRLYFCGSSVSSSPPTVKNTRN*GNC 283
G D ++P+ P RR L V + S K+L +S++S P K R +
Sbjct: 36 GFTDDTALPTNPETRLRRLKSLPVSRTDSVSSSPKKLLSHSNSMASHPE--KKYRGNVSS 93
Query: 282 LFKFVIAR*LACARSMSKFSLSETILYVSAWMPADLYSRWVQNERAGSKSVGS 124
+ F I +C S + ET ++ + SR E +GSK +GS
Sbjct: 94 VSSFSIQVGKSCPLDSS---VEETQIFSKTKRNQSVKSRGGLGESSGSKRIGS 143
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P14714
Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/89 (26%), Positives = 38/89 (42%)
Frame = -1
Query: 393 VKAVRACGDSNKRLYFCGSSVSSSPPTVKNTRN*GNCLFKFVIAR*LACARSMSKFSLSE 214
V ++R GD+ + ++ SS R G C+ VIAR A + M + L
Sbjct: 987 VSSMRLYGDNLRLQQILSETLLSSIRFTPALR--GLCVSFKVIARIEAIGKRMKRVELEF 1044
Query: 213 TILYVSAWMPADLYSRWVQNERAGSKSVG 127
I++ + +P DL Q R G+ G
Sbjct: 1045 RIIHPAPGLPEDLVREMFQPLRKGTSREG 1073
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 128 PTDLEPALSFCTHLLYKSAG 187
PTD P+LSFC +Y S G
Sbjct: 321 PTDPNPSLSFCPSNIYSSTG 340
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 117 HVCCLRTWSLLFRSAPICCTNLPASKLTH 203
HV C+ TW L + P+C +NL + +H
Sbjct: 150 HVECIDTWLLSHSTCPLCRSNLLSGFSSH 178
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = +2
Query: 167 LLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQ 346
LL+ +A A Y + + L ID A +++ Q P LR + VG +
Sbjct: 547 LLFSTASCSARLYTGTPI-QLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMV 605
Query: 347 KYNLLLESPQARTAFTNSALLLAEQY 424
+ + LE+ R+ F ALL ++Y
Sbjct: 606 ESQIALEAGFGRSLFERLALLGHKKY 631
>At4g37110.1 68417.m05256 expressed protein
Length = 417
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 212 PFYMCQLGCRQICTADGCRTKEQAPSP*AAY-VLEIL*YSSCCH 84
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 228 PDWICPV-CRDICNCSFCRTKKGWLPTGAAYRKIHKLGYKSVAH 270
>At4g15075.1 68417.m02316 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 4.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 111 LKHVCCLRTWSLLFRSAP 164
L++ CCL+T ++LF+S P
Sbjct: 126 LRNACCLKTATILFKSTP 143
>At1g13540.1 68414.m01587 expressed protein
Length = 381
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 293 QLRVFLTVGGDDDTEDPQKYNLLLESPQARTAF 391
+L V +GGDD T DP + +L+ P + +
Sbjct: 65 KLAVTFNIGGDDSTRDPVVFIPVLDKPLSSNCY 97
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 117 HVCCLRTWSLLFRSAPICCTNLPAS 191
HV C+ W L S P+C LP+S
Sbjct: 282 HVRCIVPWLELHSSCPVCRFELPSS 306
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 117 HVCCLRTWSLLFRSAPIC 170
H+CCL W L S P+C
Sbjct: 162 HLCCLDAWLKLNGSCPVC 179
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 23.0 bits (47), Expect(2) = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 149 LSFCTHLLYKSAGIQADTYKMVSLNENLDIDR 244
LS C HLL S G+ A+ +E LD+++
Sbjct: 542 LSLCKHLL--SEGMGAEAASQAFNSEKLDMEK 571
Score = 22.6 bits (46), Expect(2) = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 44 PASPSSQSKVLCYYDSKSYIRESQARMLPTDLE 142
P+ P SQS C+ SK +RE ++ D E
Sbjct: 486 PSQPLSQSFDPCFNTSKLDLREDESSSGGLDAE 518
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 345 CGSSVSSSPPTVKNTRN*GNCLF 277
CG S SSSP +V + +N CLF
Sbjct: 177 CGGSPSSSPASVLSNKNNRCCLF 199
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,503,947
Number of Sequences: 28952
Number of extensions: 200285
Number of successful extensions: 649
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -