Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L14
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    25   4.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   7.8  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   7.8  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    24   7.8  

>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 243 INIKYGFYKIIYRVYNVIVVSSVC-CLNCL 157
           IN  YGFY    R YN+ +  +   C NCL
Sbjct: 129 INRIYGFYDECKRRYNIKLWKTFTDCFNCL 158


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 276 YTNILYTLYNRHYFI*NLRF-ISMFFFQIIILHII 377
           +T+I+Y + +  YF+  L F IS +F  + ++ ++
Sbjct: 443 FTDIMYDIMDAEYFVSCLLFIISAYFLTLWLMSLV 477


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -1

Query: 289 SILVYFINVYTDFIT--HKYKVWI 224
           SIL Y+ N Y+DFI+    YKV I
Sbjct: 34  SILPYYKNSYSDFISVLQMYKVHI 57


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 345 FFFQIIILHIIGNSLFNIYG 404
           F F   I HI+G +LF I+G
Sbjct: 83  FLFPKSITHILGGTLFLIFG 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,259
Number of Sequences: 5004
Number of extensions: 25370
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)