Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L14
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0323 - 2522834-2523229,2524737-2524952                           27   4.3  
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...    27   5.6  
11_06_0179 + 20952070-20955228                                         27   5.6  

>03_01_0323 - 2522834-2523229,2524737-2524952
          Length = 203

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 228 GFYKIIYRVYNVIVVSSVCCLNCLW 154
           G  + IY VY+ I +  +  LNC W
Sbjct: 140 GKKEAIYTVYSYIAIGIILSLNCFW 164


>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/40 (25%), Positives = 26/40 (65%)
 Frame = +3

Query: 219 CKIHTLYLCVIKSV*TFIKYTNILYTLYNRHYFI*NLRFI 338
           C++  L + ++++   + K T++L+ L N  Y++ ++RF+
Sbjct: 258 CRLSPLKMYILETYTPWDKSTDVLHVLLNYWYWVASVRFL 297


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 210 YRVYNVIVVSSVCCLNC 160
           Y+ YN  + ++VCC+NC
Sbjct: 173 YQYYNNAINTTVCCMNC 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,844,781
Number of Sequences: 37544
Number of extensions: 103643
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)