Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L14
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29461| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_37495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_32915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17)           27   7.7  

>SB_29461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = -2

Query: 240 NIKYGFYKIIYRVYNVIVVSSVCCLNCLWCF*DITSSFHKDYN*QSIFFKYCIVYYVRML 61
           ++++ FY++ YRV+   V+S +     +    D+  S    Y    +FF  C + Y   +
Sbjct: 58  DVRWYFYQMFYRVFLPDVLSGIFTRCFIGYLPDVLGSMFPFYR---VFFTRCFIGYFYPV 114

Query: 60  IY 55
            Y
Sbjct: 115 FY 116


>SB_37495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = -2

Query: 240 NIKYGFYKIIYRVYNVIVVSSVCCLNCLWCF*DITSSFHKDYN*QSIFFKYCIVYYVRML 61
           ++++ FY++ YRV+   V+S +     +    D+  S    Y    +FF  C + Y   +
Sbjct: 58  DVRWYFYQMFYRVFLPDVLSGIFTRCFIGYLPDVLGSMFPFYR---VFFTRCFIGYFYPV 114

Query: 60  IY 55
            Y
Sbjct: 115 FY 116


>SB_32915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = -2

Query: 240 NIKYGFYKIIYRVYNVIVVSSVCCLNCLWCF*DITSSFHKDYN*QSIFFKYCIVYYVRML 61
           ++++ FY++ YRV+   V+S +     +    D+  S    Y    +FF  C + Y   +
Sbjct: 62  DVRWYFYQMFYRVFLPDVLSGIFTRCFIGYLPDVLGSMFPFYR---VFFTRCFIGYFYPV 118

Query: 60  IY 55
            Y
Sbjct: 119 FY 120


>SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17)
          Length = 546

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 66  YERNTLYNI*KKCFVNYNPYENST*YPRSTINNSNSKHL 182
           YE N +Y       V+ NPY+N   Y ++ I     ++L
Sbjct: 47  YESNLIYTYIGTVVVSINPYKNLPIYSKAVIEKYRGENL 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,994,559
Number of Sequences: 59808
Number of extensions: 158825
Number of successful extensions: 374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)