Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L14
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U56963-5|AAB38122.3|  323|Caenorhabditis elegans Serpentine rece...    27   3.9  
Z92785-3|CAB07202.1|  326|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical pr...    27   5.1  

>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 230 YFIFMCYKVGIDIYKIY*YTLYVI*QALFYI 322
           YFI  C++VG+ +   +  T  ++   LFYI
Sbjct: 55  YFILFCFEVGLTVVDYFIATFILLFIILFYI 85


>U56963-5|AAB38122.3|  323|Caenorhabditis elegans Serpentine
           receptor, class v protein30 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 195 VIVVSSVCCLNCLWCF*DITSSFHKDYN*QSIFFKYCIVYYVRMLIYLCIF 43
           ++++SS+C + C+ C+  +  +  K  N     FK  I    ++L+ LC F
Sbjct: 180 MLILSSMCLI-CVICYISLWITIRKHQNGSQKSFKREIYLAFQVLLLLCAF 229


>Z92785-3|CAB07202.1|  326|Caenorhabditis elegans Hypothetical
           protein F31E9.5 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = +3

Query: 198 YRLYILFCKIHTLYLCVIKSV*TFIKYTN-------ILYTLYNRHYFI*NLRFISMFFFQ 356
           +RL++LF  +  L  C+I  +  F+  TN       +LY   N  Y +    F + F   
Sbjct: 20  FRLFLLFLVVFLLLNCLISPLYVFVNKTNRPRDKTMLLYPTTNHFYEMTKKSFFTFFGLL 79

Query: 357 III 365
            +I
Sbjct: 80  FVI 82


>Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical
           protein R04B5.8 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 239 FMCYKVGIDIYKIY*YTLYVI*QALFYIELTLYKHVFFSNYYITYHRQLS 388
           F+C  V I + +   + L+++  A   + L    HVF+  Y I  H++LS
Sbjct: 77  FVCTGVCIRVGRRSCFLLHLLRDASSMVALFAIVHVFYYRYKILSHQKLS 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,151,805
Number of Sequences: 27780
Number of extensions: 131623
Number of successful extensions: 275
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)