Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L14
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31350.1 68417.m04446 expressed protein contains Pfam profile...    29   0.89 
At2g27690.1 68415.m03355 cytochrome P450, putative similar to Cy...    27   3.6  
At1g31640.1 68414.m03885 MADS-box protein-related contains INTER...    27   6.3  
At1g17060.1 68414.m02075 cytochrome P450, putative 41% identical...    27   6.3  

>At4g31350.1 68417.m04446 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 711

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +3

Query: 195 HYRLYILFCKIHTLYLCVIKSV*TFIKYTNILYTLYNRHYFI*NLRFISMFFFQIIILHI 374
           +Y  + L+C++  L L +IKS    + + ++  +++ R       RF+++   +I+++H+
Sbjct: 604 YYTKFKLYCRVRFLNLIIIKSF--SVSHVSLDRSIHGRR------RFVAIITVRILLIHL 655

Query: 375 IGN-SLFNIY 401
           I   S F+ Y
Sbjct: 656 ISRVSKFSYY 665


>At2g27690.1 68415.m03355 cytochrome P450, putative similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450; supported by
           cDNA: gi_13877668
          Length = 495

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 225 FYKIIYRVYNVIVVSSVCCLNCLWCF*DITSSFHKDY 115
           F+ II+ +++++ +  +   NC  C   +TSS+ KD+
Sbjct: 13  FFIIIFSLFHLLFLQKLRYCNCEICHAYLTSSWKKDF 49


>At1g31640.1 68414.m03885 MADS-box protein-related contains
           INTERPRO:IPR02100 MADS-box domain ;similar to MADS box
           transcription factor GI:3688589 from [Triticum aestivum]
          Length = 464

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 66  YERNTLYNI*KKCFVNYNPYENST*YP 146
           +E  TL +I K C V Y+P+EN T +P
Sbjct: 32  HELTTLCDI-KACAVIYSPFENPTVWP 57


>At1g17060.1 68414.m02075 cytochrome P450, putative 41% identical to
           Cytochrome P450 [Catharanthus roseus] (gi|404690)
          Length = 476

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 96  KKCFVNYNPYENST*YPRSTINNSNSKH 179
           KKCF  Y PY N       T+    SKH
Sbjct: 96  KKCFTWYGPYPNVIVMDPETLREIMSKH 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,262,088
Number of Sequences: 28952
Number of extensions: 103097
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)