Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L13
(515 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.6
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.6
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.1
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.1
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.1
AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc fin... 22 3.7
X06905-1|CAA30009.1| 489|Tribolium castaneum protein ( Triboliu... 21 6.5
U04271-2|AAA03709.1| 490|Tribolium castaneum alpha-amylase II p... 21 8.6
AY584475-1|AAS93634.1| 209|Tribolium castaneum homothorax protein. 21 8.6
AJ518941-1|CAD57735.1| 456|Tribolium castaneum homothorax protein. 21 8.6
AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription fa... 21 8.6
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 23.0 bits (47), Expect = 1.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + +VV + +GSCL P GI
Sbjct: 99 GFDGTFQTNVVVKHNGSCLYVPPGI 123
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 23.0 bits (47), Expect = 1.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + +VV + +GSCL P GI
Sbjct: 99 GFDGTFQTNVVVKHNGSCLYVPPGI 123
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + +VV + GSCL P GI
Sbjct: 99 GFDGTFQTNVVVKHGGSCLYVPPGI 123
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + +VV + GSCL P GI
Sbjct: 99 GFDGTFQTNVVVKHGGSCLYVPPGI 123
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
GF + +VV + GSCL P GI
Sbjct: 99 GFDGTFQTNVVVKHGGSCLYVPPGI 123
>AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc finger
protein protein.
Length = 456
Score = 21.8 bits (44), Expect = 3.7
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = -1
Query: 245 THRTLTSNRASA*LVVATSCGGDPVPV*SDLTVSNPGMAKINPSSMTSCSSYQ 87
T RT TSN + V TSC P + PG P+ + +Q
Sbjct: 86 TQRTSTSNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQPPTDNSHVHHHQ 138
>X06905-1|CAA30009.1| 489|Tribolium castaneum protein ( Tribolium
castaneum mRNAfor alhpa amylase 3'region. ).
Length = 489
Score = 21.0 bits (42), Expect = 6.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 323 PLDTDAEPPSIEPEDDDLGYVDGTKLTLPSKII 421
P D +A S++ + D G++DG K + ++I
Sbjct: 210 PADLEAIYASLKNLNTDHGFLDGQKPFIFQEVI 242
>U04271-2|AAA03709.1| 490|Tribolium castaneum alpha-amylase II
protein.
Length = 490
Score = 20.6 bits (41), Expect = 8.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 323 PLDTDAEPPSIEPEDDDLGYVDGTKLTLPSKII 421
P D +A S++ + D G++DG K + ++I
Sbjct: 211 PADLEAIYGSLKNLNTDHGFLDGQKPFIFQEVI 243
>AY584475-1|AAS93634.1| 209|Tribolium castaneum homothorax protein.
Length = 209
Score = 20.6 bits (41), Expect = 8.6
Identities = 12/54 (22%), Positives = 21/54 (38%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDAEPP 349
+TS PD++ + G + + P G ++ P+S DA P
Sbjct: 60 STSHTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLSQAPASQQSLDASDP 113
>AJ518941-1|CAD57735.1| 456|Tribolium castaneum homothorax protein.
Length = 456
Score = 20.6 bits (41), Expect = 8.6
Identities = 12/54 (22%), Positives = 21/54 (38%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDAEPP 349
+TS PD++ + G + + P G ++ P+S DA P
Sbjct: 216 STSHTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTPGPLSQAPASQQSLDASDP 269
>AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription
factor protein.
Length = 441
Score = 20.6 bits (41), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 1 DEGTTEKNKEESREGKTGWKRH 66
D+G + +N+ ES E + RH
Sbjct: 412 DDGGSGQNQPESPESSSSTPRH 433
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,331
Number of Sequences: 336
Number of extensions: 1915
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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