Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L13
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25)             67   7e-12
SB_46167| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_12920| Best HMM Match : zf-CCHC (HMM E-Value=6.2e-05)               29   3.0  
SB_34408| Best HMM Match : zf-CCHC (HMM E-Value=0.0083)                28   4.0  
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_45976| Best HMM Match : MBT (HMM E-Value=0)                         27   9.2  
SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)               27   9.2  

>SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25)
          Length = 1137

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +2

Query: 221 DLKLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPL-DTDAEPPSIEPEDDDLGYVDGTK 397
           D +LKCGACGQ+GHMRTNK CPLY  +  G  S  + D           +DDL  V+GTK
Sbjct: 424 DEELKCGACGQIGHMRTNKNCPLYQEANPGSLSVAMTDEQVAEEEFNMPNDDLVKVEGTK 483

Query: 398 LTLPSKIIKQ 427
           +TL    + Q
Sbjct: 484 ITLGKAFLDQ 493


>SB_46167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 35

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/16 (75%), Positives = 16/16 (100%)
 Frame = +2

Query: 5  REQLRRIKRNQERERL 52
          +EQLRRI+RNQE+E+L
Sbjct: 3  QEQLRRIRRNQEKEKL 18


>SB_12920| Best HMM Match : zf-CCHC (HMM E-Value=6.2e-05)
          Length = 845

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 227 KLKCGACGQVGHMRTNKACP 286
           KL C  CG+ GH++ +++CP
Sbjct: 121 KLVCFNCGKEGHIKKDRSCP 140


>SB_34408| Best HMM Match : zf-CCHC (HMM E-Value=0.0083)
          Length = 158

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 233 KCGACGQVGHMRTNKAC 283
           KC  CGQ GHM   K C
Sbjct: 51  KCFRCGQEGHMSNEKGC 67


>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +2

Query: 227 KLKCGACGQVGHMR---TNKACPLYTGSMAGGPSS 322
           K KC  CG+VGH++    +K C        G P +
Sbjct: 514 KYKCDNCGKVGHLKRVCQSKECKKXXXXQGGKPKT 548


>SB_45976| Best HMM Match : MBT (HMM E-Value=0)
          Length = 839

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 164 KQEPDLLHTTSRRRAK-LKPDLKLKCGACGQVG 259
           KQ+ ++   +++R+AK + PD  L C  CG+ G
Sbjct: 205 KQDQEMEKKSNKRKAKPIPPDQILCCEVCGKYG 237


>SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 185 HTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLY 292
           H+   R   ++ D+   C  CG VGH + +  CP +
Sbjct: 263 HSRQGRDRTIQEDIV--CYQCGNVGHTKRDSKCPAH 296


>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
          Length = 662

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 158 QIKQEPDLLHTTSRRRAKLKPDLKLKCGACGQ 253
           Q +QE     TTS   A   P  +LKC  CGQ
Sbjct: 55  QQQQEQKQNSTTSSSSASSSPLQRLKCPTCGQ 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,560,408
Number of Sequences: 59808
Number of extensions: 240025
Number of successful extensions: 739
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)