Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L13
(515 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S61883-1|AAB26991.2| 2068|Drosophila melanogaster transcription ... 107 9e-24
BT024196-1|ABC86258.1| 1964|Drosophila melanogaster RE63802p pro... 107 9e-24
BT004888-1|AAO47866.1| 2096|Drosophila melanogaster RE74933p pro... 107 9e-24
AE014297-491|AAF54102.3| 2065|Drosophila melanogaster CG17603-PA... 107 9e-24
AE014297-490|AAS65117.1| 2098|Drosophila melanogaster CG17603-PC... 107 9e-24
AE014297-489|AAS65116.1| 2129|Drosophila melanogaster CG17603-PB... 107 9e-24
AE001572-25|AAD19815.1| 2065|Drosophila melanogaster transcripti... 107 9e-24
U59476-1|AAB07067.1| 352|Drosophila melanogaster RNA-binding pr... 32 0.40
AY061458-1|AAL29006.1| 352|Drosophila melanogaster LD40792p pro... 32 0.40
AE014296-1235|AAN12056.1| 352|Drosophila melanogaster CG8597-PE... 32 0.40
AE014296-1234|AAN12055.1| 352|Drosophila melanogaster CG8597-PD... 32 0.40
AE014296-1233|AAN12054.1| 352|Drosophila melanogaster CG8597-PC... 32 0.40
AE014296-1232|AAN12053.1| 352|Drosophila melanogaster CG8597-PB... 32 0.40
AE014296-1231|AAF50578.1| 352|Drosophila melanogaster CG8597-PA... 32 0.40
AF262977-1|AAF76150.1| 5233|Drosophila melanogaster highwire pro... 31 0.93
AE014298-2087|AAF48411.3| 5233|Drosophila melanogaster CG32592-P... 31 0.93
BT022756-1|AAY55172.1| 287|Drosophila melanogaster IP14752p pro... 30 1.6
BT022743-1|AAY55159.1| 292|Drosophila melanogaster IP14552p pro... 30 1.6
BT022737-1|AAY55153.1| 285|Drosophila melanogaster IP14452p pro... 30 1.6
AY118894-1|AAM50754.1| 318|Drosophila melanogaster LD04179p pro... 30 1.6
AE014296-3079|AAF49213.2| 366|Drosophila melanogaster CG6843-PA... 30 1.6
BT021298-1|AAX33446.1| 373|Drosophila melanogaster RE23705p pro... 28 8.6
AE014296-2664|AAN11765.1| 373|Drosophila melanogaster CG32155-P... 28 8.6
AE014296-1304|AAN12045.1| 9196|Drosophila melanogaster CG32377-P... 28 8.6
>S61883-1|AAB26991.2| 2068|Drosophila melanogaster transcription
factor TFIID 230kda subunit protein.
Length = 2068
Score = 107 bits (257), Expect = 9e-24
Identities = 68/146 (46%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Frame = +2
Query: 5 REQLRRIKRNQERERLAGNVTVPGXXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLL 184
+EQLRRIKRNQERERLA G + P
Sbjct: 1280 QEQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP--- 1336
Query: 185 HTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PP 349
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1337 ---SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEK 1393
Query: 350 SIEPEDDDLGYVDGTKLTLPSKIIKQ 427
+ +DDDL VDGTK+TL SKI+K+
Sbjct: 1394 EMTMDDDDLVNVDGTKVTLSSKILKR 1419
>BT024196-1|ABC86258.1| 1964|Drosophila melanogaster RE63802p protein.
Length = 1964
Score = 107 bits (257), Expect = 9e-24
Identities = 68/146 (46%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Frame = +2
Query: 5 REQLRRIKRNQERERLAGNVTVPGXXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLL 184
+EQLRRIKRNQERERLA G + P
Sbjct: 1277 QEQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP--- 1333
Query: 185 HTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PP 349
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 ---SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEK 1390
Query: 350 SIEPEDDDLGYVDGTKLTLPSKIIKQ 427
+ +DDDL VDGTK+TL SKI+K+
Sbjct: 1391 EMTMDDDDLVNVDGTKVTLSSKILKR 1416
>BT004888-1|AAO47866.1| 2096|Drosophila melanogaster RE74933p protein.
Length = 2096
Score = 107 bits (257), Expect = 9e-24
Identities = 68/146 (46%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Frame = +2
Query: 5 REQLRRIKRNQERERLAGNVTVPGXXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLL 184
+EQLRRIKRNQERERLA G + P
Sbjct: 1277 QEQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP--- 1333
Query: 185 HTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PP 349
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 ---SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEK 1390
Query: 350 SIEPEDDDLGYVDGTKLTLPSKIIKQ 427
+ +DDDL VDGTK+TL SKI+K+
Sbjct: 1391 EMTMDDDDLVNVDGTKVTLSSKILKR 1416
>AE014297-491|AAF54102.3| 2065|Drosophila melanogaster CG17603-PA,
isoform A protein.
Length = 2065
Score = 107 bits (257), Expect = 9e-24
Identities = 68/146 (46%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Frame = +2
Query: 5 REQLRRIKRNQERERLAGNVTVPGXXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLL 184
+EQLRRIKRNQERERLA G + P
Sbjct: 1277 QEQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP--- 1333
Query: 185 HTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PP 349
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 ---SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEK 1390
Query: 350 SIEPEDDDLGYVDGTKLTLPSKIIKQ 427
+ +DDDL VDGTK+TL SKI+K+
Sbjct: 1391 EMTMDDDDLVNVDGTKVTLSSKILKR 1416
>AE014297-490|AAS65117.1| 2098|Drosophila melanogaster CG17603-PC,
isoform C protein.
Length = 2098
Score = 107 bits (257), Expect = 9e-24
Identities = 68/146 (46%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Frame = +2
Query: 5 REQLRRIKRNQERERLAGNVTVPGXXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLL 184
+EQLRRIKRNQERERLA G + P
Sbjct: 1277 QEQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP--- 1333
Query: 185 HTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PP 349
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 ---SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEK 1390
Query: 350 SIEPEDDDLGYVDGTKLTLPSKIIKQ 427
+ +DDDL VDGTK+TL SKI+K+
Sbjct: 1391 EMTMDDDDLVNVDGTKVTLSSKILKR 1416
>AE014297-489|AAS65116.1| 2129|Drosophila melanogaster CG17603-PB,
isoform B protein.
Length = 2129
Score = 107 bits (257), Expect = 9e-24
Identities = 68/146 (46%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Frame = +2
Query: 5 REQLRRIKRNQERERLAGNVTVPGXXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLL 184
+EQLRRIKRNQERERLA G + P
Sbjct: 1277 QEQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP--- 1333
Query: 185 HTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PP 349
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 ---SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEK 1390
Query: 350 SIEPEDDDLGYVDGTKLTLPSKIIKQ 427
+ +DDDL VDGTK+TL SKI+K+
Sbjct: 1391 EMTMDDDDLVNVDGTKVTLSSKILKR 1416
>AE001572-25|AAD19815.1| 2065|Drosophila melanogaster transcription
factor protein.
Length = 2065
Score = 107 bits (257), Expect = 9e-24
Identities = 68/146 (46%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Frame = +2
Query: 5 REQLRRIKRNQERERLAGNVTVPGXXXXXXXXXXXXXXXXXXXXQGLIPLGQIKQEPDLL 184
+EQLRRIKRNQERERLA G + P
Sbjct: 1277 QEQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSP--- 1333
Query: 185 HTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMA----GGPSSPLDTDAE-PP 349
SR++ KLKPDLKLKCGACGQVGHMRTNKACPLY+G + PS D D +
Sbjct: 1334 ---SRKKFKLKPDLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNPSLADDFDEQSEK 1390
Query: 350 SIEPEDDDLGYVDGTKLTLPSKIIKQ 427
+ +DDDL VDGTK+TL SKI+K+
Sbjct: 1391 EMTMDDDDLVNVDGTKVTLSSKILKR 1416
>U59476-1|AAB07067.1| 352|Drosophila melanogaster RNA-binding
protein lark protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AY061458-1|AAL29006.1| 352|Drosophila melanogaster LD40792p
protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AE014296-1235|AAN12056.1| 352|Drosophila melanogaster CG8597-PE,
isoform E protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AE014296-1234|AAN12055.1| 352|Drosophila melanogaster CG8597-PD,
isoform D protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AE014296-1233|AAN12054.1| 352|Drosophila melanogaster CG8597-PC,
isoform C protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AE014296-1232|AAN12053.1| 352|Drosophila melanogaster CG8597-PB,
isoform B protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AE014296-1231|AAF50578.1| 352|Drosophila melanogaster CG8597-PA,
isoform A protein.
Length = 352
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 TTSRRRAKLKPDLKLKCGACGQVGHMRTNKACPLYTGSMAGG--PSSPL 328
+TSR R K +C CG+ GH +K CP GS GG P SPL
Sbjct: 154 STSRVRPKPGMGDPEQCYRCGRSGHW--SKECPRLYGSAGGGREPPSPL 200
>AF262977-1|AAF76150.1| 5233|Drosophila melanogaster highwire protein.
Length = 5233
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 266 RTNKACPLYTGSMAGGPSSPLDTDAEPPSIEP 361
R + L TG+ GG ++P D D +PP + P
Sbjct: 923 RKERKGELETGAAGGGAATPTDLDKDPPRVAP 954
>AE014298-2087|AAF48411.3| 5233|Drosophila melanogaster CG32592-PA
protein.
Length = 5233
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 266 RTNKACPLYTGSMAGGPSSPLDTDAEPPSIEP 361
R + L TG+ GG ++P D D +PP + P
Sbjct: 923 RKERKGELETGAAGGGAATPTDLDKDPPRVAP 954
>BT022756-1|AAY55172.1| 287|Drosophila melanogaster IP14752p
protein.
Length = 287
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDA 340
++C C + GH+ T+K C +Y+ SM+ +T+A
Sbjct: 149 VRCLKCHKWGHINTDKECTMYSISMSEARKLHAETEA 185
>BT022743-1|AAY55159.1| 292|Drosophila melanogaster IP14552p
protein.
Length = 292
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDA 340
++C C + GH+ T+K C +Y+ SM+ +T+A
Sbjct: 152 VRCLKCHKWGHINTDKECTMYSISMSEARKLHAETEA 188
>BT022737-1|AAY55153.1| 285|Drosophila melanogaster IP14452p
protein.
Length = 285
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDA 340
++C C + GH+ T+K C +Y+ SM+ +T+A
Sbjct: 148 VRCLKCHKWGHINTDKECTMYSISMSEARKLHAETEA 184
>AY118894-1|AAM50754.1| 318|Drosophila melanogaster LD04179p
protein.
Length = 318
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDA 340
++C C + GH+ T+K C +Y+ SM+ +T+A
Sbjct: 126 VRCLKCHKWGHINTDKECTMYSISMSEARKLHAETEA 162
>AE014296-3079|AAF49213.2| 366|Drosophila melanogaster CG6843-PA
protein.
Length = 366
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDA 340
++C C + GH+ T+K C +Y+ SM+ +T+A
Sbjct: 126 VRCLKCHKWGHINTDKECTMYSISMSEARKLHAETEA 162
>BT021298-1|AAX33446.1| 373|Drosophila melanogaster RE23705p
protein.
Length = 373
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 138 WDGKDKSIVDDVMLELSEILGPGTVTF 58
W G+++S DD+M +++ +L PG T+
Sbjct: 71 WIGRNRSYYDDLMRKINGVLLPGGATW 97
>AE014296-2664|AAN11765.1| 373|Drosophila melanogaster CG32155-PA
protein.
Length = 373
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 138 WDGKDKSIVDDVMLELSEILGPGTVTF 58
W G+++S DD+M +++ +L PG T+
Sbjct: 71 WIGRNRSYYDDLMRKINGVLLPGGATW 97
>AE014296-1304|AAN12045.1| 9196|Drosophila melanogaster CG32377-PA
protein.
Length = 9196
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 287 LYTGSMAGGPSSPLDTDAEPPSIEPEDDD-LGYVDGT 394
L TG+ GG SPL + +P S E +D+ L DG+
Sbjct: 3727 LVTGATFGGDGSPLHPEEKPKSPEKKDEKVLAKPDGS 3763
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 287 LYTGSMAGGPSSPLDTDAEPPSIEPEDDD-LGYVDGT 394
L TG+ GG SPL + +P S E +D+ L DG+
Sbjct: 4031 LVTGATFGGDGSPLHPEEKPKSPEKKDEKVLAKPDGS 4067
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,923
Number of Sequences: 53049
Number of extensions: 348773
Number of successful extensions: 1094
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -