Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_L13
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 40 0.001
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 40 0.001
AF016419-1|AAG24051.1| 499|Caenorhabditis elegans Hypothetical ... 31 0.49
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF016419-3|AAG24048.1| 529|Caenorhabditis elegans Hypothetical ... 29 1.5
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 29 1.5
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu... 27 6.0
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu... 27 6.0
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 6.0
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 6.0
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein. 27 6.0
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
W04A8.7 protein.
Length = 1792
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 218 PDL-KLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDAEPPSI 355
P+L K++C AC GHM+TN+ CPLY P +PL + E +I
Sbjct: 1261 PNLQKMRCSACHAYGHMKTNRNCPLY----GKDPLTPLKEEDEGSTI 1303
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 218 PDL-KLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDAEPPSI 355
P+L K++C AC GHM+TN+ CPLY P +PL + E +I
Sbjct: 1261 PNLQKMRCSACHAYGHMKTNRNCPLY----GKDPLTPLKEEDEGSTI 1303
>AF016419-1|AAG24051.1| 499|Caenorhabditis elegans Hypothetical
protein F07G11.4 protein.
Length = 499
Score = 31.1 bits (67), Expect = 0.49
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 226 EVKVRCVRSSGSYAYKQGVSPVYRFYGWRTFFST*YGC 339
+V ++CVR + +Y+ + + PV +Y +FS GC
Sbjct: 459 QVNIKCVRVNATYSSMKKLMPVTYYYATDPYFSDEMGC 496
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
protein K04B12.1 protein.
Length = 1764
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = -1
Query: 347 VVQHPYQVEKKVLQP*NRYTGDTPCLYAYDPLDR----THRTLTSNRASA*LVVATSC-- 186
+VQ PY + + L + ++ T CL + DPL + T TS R ++ V + C
Sbjct: 430 IVQMPYGIILEELSTCSHHSSCTECLVSVDPLCQWCHPTQSCTTSARCTS--PVTSQCPI 487
Query: 185 -GGDPVPV*SDLTVSNP 138
GDP+P + S P
Sbjct: 488 VDGDPIPSIVSVNSSTP 504
>AF016419-3|AAG24048.1| 529|Caenorhabditis elegans Hypothetical
protein F07G11.3 protein.
Length = 529
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 235 VRCVRSSGSYAYKQGVSPVYRFYGWRTFFST*YGC 339
++C+R + +Y + +SPV +Y +FS GC
Sbjct: 492 IKCMRINATYTAMETLSPVTYYYATDPYFSDTMGC 526
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = -1
Query: 347 VVQHPYQVEKKVLQP*NRYTGDTPCLYAYDPLDR----THRTLTSNRASA*LVVATSC-- 186
+VQ PY + + L + ++ T CL + DPL + T TS R ++ V + C
Sbjct: 432 IVQMPYGIILEELSTCSHHSSCTECLVSVDPLCQWCHPTQSCTTSARCTS--PVTSQCPI 489
Query: 185 -GGDPVPV*SDLTVSNP 138
GDP+P + S P
Sbjct: 490 VDGDPIPSIVSVNSSTP 506
>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform b protein.
Length = 1273
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 284 PLYTG--SMAGGPSSPLD--TDAEPPSIEPEDDDLGYVDGTKLTLPSKIIK 424
P ++G S+ G PS+ +D T PPS+ PED + ++ T L + K K
Sbjct: 727 PYHSGVHSIHGAPSNSMDVLTAEAPPSLPPEDVRIRMLNLTTLRISWKAPK 777
>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform a protein.
Length = 1269
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 284 PLYTG--SMAGGPSSPLD--TDAEPPSIEPEDDDLGYVDGTKLTLPSKIIK 424
P ++G S+ G PS+ +D T PPS+ PED + ++ T L + K K
Sbjct: 727 PYHSGVHSIHGAPSNSMDVLTAEAPPSLPPEDVRIRMLNLTTLRISWKAPK 777
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLY 292
++C C + GH+ T++ CPL+
Sbjct: 122 VRCCKCHKWGHINTDRECPLF 142
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 230 LKCGACGQVGHMRTNKACPLY 292
++C C + GH+ T++ CPL+
Sbjct: 122 VRCCKCHKWGHINTDRECPLF 142
>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
Length = 1273
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 284 PLYTG--SMAGGPSSPLD--TDAEPPSIEPEDDDLGYVDGTKLTLPSKIIK 424
P ++G S+ G PS+ +D T PPS+ PED + ++ T L + K K
Sbjct: 727 PYHSGVHSIHGAPSNSMDVLTAEAPPSLPPEDVRIRMLNLTTLRISWKAPK 777
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,830,340
Number of Sequences: 27780
Number of extensions: 178930
Number of successful extensions: 553
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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