Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_L13
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   0.35 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   1.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   1.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.5  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 236 CGACGQVGHMRTNKACP 286
           CGACG + H  T K CP
Sbjct: 78  CGACGDIAH--TVKYCP 92


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 61  VSSQSFPLLIPLYSSQLFPR 2
           V+ QS+ L +P +++ +FPR
Sbjct: 182 VAEQSYGLTLPSWTNNIFPR 201


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 61  VSSQSFPLLIPLYSSQLFPR 2
           V+ QS+ L +P +++ +FPR
Sbjct: 197 VAEQSYGLTLPSWTNNIFPR 216


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 61  VSSQSFPLLIPLYSSQLFPR 2
           V+ QS+ L +P +++ +FP+
Sbjct: 85  VAEQSYGLTLPSWTNNIFPK 104


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
           GF    + +VV   +GSCL  P GI
Sbjct: 150 GFDGTYQTNVVVTHNGSCLYVPPGI 174


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
           GF    + +VV   +GSCL  P GI
Sbjct: 150 GFDGTYQTNVVVTHNGSCLYVPPGI 174


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 218 PDLKLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDAE 343
           PD+ L   A G+ G     KA   YTG +   P +   +  E
Sbjct: 105 PDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCE 146


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
           GF    +  VV   +GSCL  P GI
Sbjct: 82  GFDGTYQTSVVVTHNGSCLYVPPGI 106


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
           GF    +  VV    GSCL  P GI
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGI 106


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
           GF    +  VV    GSCL  P GI
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGI 106


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
           GF    +  VV    GSCL  P GI
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGI 106


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
           GF    +  VV    GSCL  P GI
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGI 106


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
           GF    +  VV    GSCL  P GI
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGI 106


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 155 LTVSNPGMAKINPSSMTSCSSYQK 84
           LT+S   +A I+P +  +CS  ++
Sbjct: 412 LTLSGNAIASIDPLAFRNCSDLKE 435


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 219 GFSLARRRDVVWRRSGSCLI*PNGI 145
           GF      +VV + +G+CL  P GI
Sbjct: 119 GFDGTYPTNVVVKNNGTCLYVPPGI 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,422
Number of Sequences: 438
Number of extensions: 2103
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)